Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20rubrivinctus_20[genbank_20GCA_5F000475215.1_202013-10-22] 68,206 sequences; 756,296,653 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq34972 396 3e-105 seq25594 102 9e-17 seq8304 96.9 4e-15 seq13328 84.2 2e-11 seq7495 84.2 2e-11 >seq34972 Length=31405 Score = 396 bits (438), Expect = 3e-105 Identities = 917/1360 (67%), Gaps = 49/1360 (4%) Strand=Plus/Minus Query 78508 AACTCGCCGGCCAGGGTCCGGCGCAGGTAGATGTTGGTCGTGTACGGCTCGAAAGCCTCG 78567 ||||| |||| ||| || ||| |||||||||| | ||||| | |||| | |||| Sbjct 3328 AACTCTCCGGAGAGGACCCTGCGGGTGTAGATGTTGCTGGTGTAGGCTTCGATGGACTCG 3269 Query 78568 TTGTTCCCCATGATCTGGGCGGTCGAGGCGGTCGGCATGGGTGCGACCAGTAGAGAATTC 78627 ||||| |||| |||||||||||| ||||| || ||||| || || | ||| || ||| Sbjct 3268 TTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGCATCGGGGCCAGCAGCAGGCTGTTC 3209 Query 78628 CGAAGACCATGCGTCTTGATCTCGACCTTTAGG------CCGTCCCAAAATTCATTCGCC 78681 | | || || | ||||| |||| || | |||| | ||| | | | Sbjct 3208 CTCACGCCGTGGATGGCGATCTTCTCCTTCAGCAGCTTCCAGTCCAGCAGTTCGGTGGGC 3149 Query 78682 GCGATCCCCCACATGTCCGGTTGAAGGATACCCTCG--GACGCCGGCGACCCCTTGAACG 78739 || |||||||||| || ||||| |||| | |||| || || || | ||| Sbjct 3148 TTCTTCTCCCACATGTCGTACTGCAGGATGCCCTTGCTGACG--GGAGAGCCTGCGTACG 3091 Query 78740 TCTCGTAAGATCCCTCCTCCTTGGCGAGTTCGCATGACTCGAGCAGGGCCGCGTGGTACA 78799 ||||||| | || ||| ||| || ||||| | | |||||| |||||||| | Sbjct 3090 TCTCGTAGGGGCCGAGCTCGGCGGCCAGCTCGCAGCTCGCCTCCAGGGCGGCGTGGTAGA 3031 Query 78800 CAGCCTCGAAGATGCCCTTGTTGAGCTCGCGCGCCTTGGTCTCGTCGAACGA--AAGGCC 78857 ||||||||||| | || ||| | |||| | ||||||| || || Sbjct 3030 TGGCCTCGAAGATTTGAATATTCAGCAGCTGAGCCTCTTTGCTTTCGAACGGGTAACGC- 2972 Query 78858 GAGCATCATGAAGACATCGGCCAGGCCCTGGACGCCGATAGCGATCGGTCGGTGGCGCAT 78917 | | |||||| |||| |||| || |||||||| || | ||||| | ||||||| | Sbjct 2971 -ATGAGGATGAAGGCATCCGCCAAACCTTGGACGCCAATTCCAATCGGCCTGTGGCGCTT 2913 Query 78918 GTTGCTCTTTCGGGCCGCCTCGGTC---GGGTAAAAGTTCCGATCGATGACGCGGTTCAG 78974 |||| |||| |||| |||| | || || |||| |||||||| ||||| Sbjct 2912 GTTGGACTTTT---CCGCTTCGGGCACTGGATAGTAGTTAATTTCGATGACCTTGTTCAA 2856 Query 78975 GTTACGCGTGACGA---CCCGAGTCACCTCGTACAATTTGGCGAAATCAAAA-TGATTTC 79030 || | |||||| | ||||| || ||| || |||||| | || Sbjct 2855 ATT---CTTGACGATTACTTTGGTCACAGACGCCAGTTTTTTAAAGTCAAAAGTCCGCTC 2799 Query 79031 CTT--TGATGAAAGTCGGTAG-GCACAGCGATGCCAGGTTGCACACGGCCGTCTCGTCCG 79087 | ||| | | | || ||| | || ||||| |||||||| || ||| || Sbjct 2798 CGGGGTGACGTACATGTTGAGCGCA-ATTGAGGCCAGATTGCACACCGCTACCTCATCGT 2740 Query 79088 GGCTAGAAACCTCGATGATTTCTGTGCACAAATTAGACGACTTGATGGTGCCGATGTTCT 79147 |||| | |||||| ||||||||||| | || |||||||||||||| | |||| Sbjct 2739 GGCTGGTGTACTCGATAATTTCTGTGCAGAGGTTGCTGGACTTGATGGTGCCCAGATTCT 2680 Query 79148 TCTGGTTGCTCTTCTCGTTACAGGCGTCCTTGTAGCACATGTACGGCGTCCCGGTCTCAA 79207 |||||||||||| ||| |||||||| ||||| |||||| ||||| || || || Sbjct 2679 GTTGGTTGCTCTTCCTGTTGCAGGCGTCTTTGTACAGCATGTATGGCGTGCCAGTTTCTG 2620 Query 79208 CCTGACTCTTGAGAACGCCGTCCCAGATGTCCCGGGCCCGGACAACCTTCTTGTACCGAC 79267 ||| || || |||| ||| ||| | | | | ||| || || |||| || | Sbjct 2619 TCTGGGACTCGATAACGGCGTGCCACAACTGCTGAGCCTTCACCACGCGCTTGAACTTCC 2560 Query 79268 CCTGTGCGACGTACGTCCGGTACAACTCGTTGAAAGCCTCCCCATAGACATCGGGCAGGC 79327 |||| | || | ||| | || | ||| ||||||| || || ||| | Sbjct 2559 CCTGCTTCTCATAGGAGGTGTAGAGCTTTTCGAACTCCTCCCCCCAGCACTCATCCAGCC 2500 Query 79328 CCGGGCACTCGTGCGGGCACATCAGGTGCCAGTCCTCGTCCTTCTCAACCTTCTCCATGA 79387 | |||||||||| || |||||||| ||||||||||| |||| || ||| ||||| Sbjct 2499 CTGGGCACTCGTTGGGACACATCAGAGACCAGTCCTCGTTGCTCTCCACTCTCTTCATGA 2440 Query 79388 AGAGGTCCGGGATCCACAGGGCCGT-GAAGAGGTCGCGGCAACGCATCTCCTCGTCGCCC 79446 | ||||| |||||||||||| |||| ||| ||||| | | | | |||||| | || Sbjct 2439 ACAGGTCGGGGATCCACAGG-CCGTAGAAAAGGTCCCTGGCTCTCTGCTCCTCCTTTCCG 2381 Query 79447 TGGTTCAGACGCAGCTCGAGAAAGTCCATGATGTCGGCGTGCCACGGCTCCAGATAGATG 79506 |||| ||||| || ||||| | | |||||||||||| |||||||| || ||| Sbjct 2380 GTGTTCTTCTTTAGCTCCAGGAAGTCAAACACGTCGGCGTGCCAGGGCTCCAGGTACATG 2321 Query 79507 GCGAACGAACCCTTGCGCTTGCCGCCGCCCTGGTTGACGTACCGGGCCGTGTTGTTGAAA 79566 || || | || | |||| ||||||||||| |||||| || |||||||||||| || Sbjct 2320 GCAAAGGCTCCTGGTCTCTTGTTGCCGCCCTGGTCGACGTAACGTGCCGTGTTGTTGTAA 2261 Query 79567 ACTCGGAGCATGGGCACGATGCCGTCGGCGACGCCGTTCGTCCCGTTGATTCGTGTACCG 79626 |||| |||||||| |||| |||| || | |||||| || ||| || |||| | Sbjct 2260 ACTCTCAGCATGGGGACGACCCCGTTGGAGTTGCCGTTGGTGCCGGCGA----TGTA--G 2207 Query 79627 CTCGCCCGAATGTTC-GA-GCAG----TGG--ATTCCGATGCCCCCGGACCACTTGGAGA 79678 ||| |||| ||||| || |||| | | | ||||| ||||||| | ||||||| Sbjct 2206 CTC-CCCG-TTGTTCTGATGCAGCTTATCGCCACACCGATTCCCCCGGCTGATTTGGAGA 2149 Query 79679 TGTGCGCGCACTCCTTGAGCGTCTCGTAGATGCCCTCGATCGAGTCGTCCTTCATAGCGA 79738 || | ||||| | ||| ||||| ||||| ||||| ||||| |||||| ||||| |||| Sbjct 2148 TGAGGGCGCATTGCTTCAGCGTGTCGTAAATGCCTTCGATGCTGTCGTCTTTCATGGCGA 2089 Query 79739 CCAGGAAGCAGCTCGACATCTGTGGGTTGTTCGTACCGGCGTTGAAGAGGGTCGGCGTCG 79798 |||||||||||| |||| |||||| |||| || || ||||||||||| || || | | Sbjct 2088 GCAGGAAGCAGCTGGACAGCTGTGGCCTGTTGGTTCCTGCGTTGAAGAGCGTGGGGGAGG 2029 Query 79799 CGTGCGTGAAGAACTTTTGGCTCATCAGATCGTACGTCTC 79838 |||| ||||| |||| | || ||| | ||||||||| Sbjct 2028 CGTGGGTGAACCACTTCTCTGACAGCAGGTTGTACGTCTC 1989 Score = 271 bits (300), Expect = 8e-68 Identities = 873/1336 (65%), Gaps = 53/1336 (4%) Strand=Plus/Plus Query 19166 GAGACATACGACCTGATGAGCCAGAAGTTCTTCACGCACGCGACGCCGACCCTTTTCAAC 19225 ||||| ||| ||||| || |||||| ||||| ||||| | || || || |||||| Sbjct 1989 GAGACGTACAACCTGCTGTCAGAGAAGTGGTTCACCCACGCCTCCCCCACGCTCTTCAAC 2048 Query 19226 GCCGGTACGAACAACCCGCAGATGTCGAGCTGTTTCCTAGTGGCTATGAAGGATGACAGC 19285 || || || |||| || ||| |||| ||||| ||||| | || ||||| || |||||| Sbjct 2049 GCAGGAACCAACAGGCCACAGCTGTCCAGCTGCTTCCTGCTCGCCATGAAAGACGACAGC 2108 Query 19286 ATTGAGGGCATCTACGAGACGCTCAAGGAGTGCGCGCACATCTCCAAGTGGTCCGGGGGT 19345 || || ||||| ||||| ||||| ||| | ||||| | ||||||||| | ||||||| Sbjct 2109 ATCGAAGGCATTTACGACACGCTGAAGCAATGCGCCCTCATCTCCAAATCAGCCGGGGGA 2168 Query 19346 ATCGG------GATCCACTGC-TC-GAATATCCGGTCGAGTGGTACACGAATCAATGGGA 19397 ||||| ||| |||| || ||| | | || | | |||| || || | Sbjct 2169 ATCGGTGTGGCGATAAGCTGCATCAGAACAACGGG----GAGCTACA----TCGCCGGCA 2220 Query 19398 CGAACGGAGTAGCCGACGGTATCGTCCCAATGCTCCGCGTCTTCAACAACACGGCCAGGT 19457 | ||||| || |||| ||||||| ||||| | || | |||||||||||| | | Sbjct 2221 CCAACGGCAACTCCAACGGGGTCGTCCCCATGCTGAGAGTTTACAACAACACGGCACGTT 2280 Query 19458 ACGTCAACCAGGGGGGCGGCAAACGCAAGGGCTCGTTCGCCATCTACCTCGAGCCATGGC 19517 ||||| ||||||| ||| ||| | || | || ||||| ||||| ||||| |||| Sbjct 2281 ACGTCGACCAGGGCGGCAACAAGAGACCAGGAGCCTTTGCCATGTACCTGGAGCCCTGGC 2340 Query 19518 ACGCGGACGTCATGGATTTCCTCGAACTGCGCCTGAACCAGGGTGACGAGGAGATGCGCT 19577 |||| ||||| | || ||||| || || |||| || | |||||| | | Sbjct 2341 ACGCCGACGTGTTTGACTTCCTGGAGCTAAAGAAGAACACCGGAAAGGAGGAGCAGAGAG 2400 Query 19578 GTCGCGACCTCTTC-ACGGCCTTGTGGATTCCGGACCTATTCATGGAGAAGGTTGAGAAG 19636 | ||||| ||| |||||| ||||||| || ||||| |||||| ||| || |||| Sbjct 2401 CCAGGGACCTTTTCTACGGCC-TGTGGATCCCCGACCTGTTCATGAAGAGAGTGGAGAGC 2459 Query 19637 GACGAAGAATGGCACCTGATGTGCCCGCACGAATGCCCTGGCCTACCCGACGTCTACGGC 19696 |||| || ||| |||||||| || |||| ||||| || || || || || Sbjct 2460 AACGAGGACTGGTCTCTGATGTGTCCCAACGAGTGCCCAGGGCTGGATGAGTGCTGGGGG 2519 Query 19697 GAGGCGTTCAATGAGTTGTACCGGACTTACGTAGCCCAGGGCCGGTTCAAGAAGGTGGTC 19756 |||| |||| | || | ||| | || | ||||| ||||||| ||||| Sbjct 2520 GAGGAGTTCGAAAAGCTCTACACCTCCTATGAGAAGCAGGGGAAGTTCAAGCGCGTGGTG 2579 Query 19757 CGGGCCCGGGACGTCTGGGACCGCGTCCTCAAAAGCCAGGTCGAGACCGGCACACCGTAC 19816 ||| | | | | ||| || ||| || | |||| || || ||||| || ||| Sbjct 2580 AAGGCTCAGCAGTTGTGGCACGCCGTTATCGAGTCCCAGACAGAAACTGGCACGCCATAC 2639 Query 19817 ATGTGCTACAAGGACGCCGCGAACGCCAAGTCAAATCAGAAGAACATCGGCGCGATCAAG 19876 ||| ||||| |||||| ||| ||| || || |||| | ||| | |||||| Sbjct 2640 ATGCTGTACAAAGACGCCTGCAACAGGAAGAGCAACCAACAGAATCTGGGCACCATCAAG 2699 Query 19877 TCGTCCAACCTGTGTACTGAAATCATGGAGGTTTCCAAGCCGGACGAGACTGCCGTGTGT 19936 || |||||| || || ||||| || ||| ||| | || ||| || ||||| Sbjct 2700 TCCAGCAACCTCTGCACAGAAATTATCGAGTACACCAGCCACGATGAGGTAGCGGTGTGC 2759 Query 19937 AATCTGGCGTCCCTGTGC-CTGCCGACTTTCGTCA---AGGCCTCCTCCTTCGACTTTGC 19992 |||||||| || | ||| || | | ||||| || | || |||||| Sbjct 2760 AATCTGGCCTCAAT-TGCGCTCAACATGTACGTCACCCCGGAGCGGACTTTTGACTTTAA 2818 Query 19993 CAAATTGTACGAGGTGACCCGGG---TCGTCACGCGTAATCTGAATCGCGTCATCGATCG 20049 ||| || |||||| | |||||| | ||| |||| |||||||| Sbjct 2819 AAAACTGGCGTCTGTGACCAAAGTAATCGTCAAG---AATTTGAACAAGGTCATCGAAAT 2875 Query 20050 GAACTTTTACCC---GACCGAGGCGGCGCGCAAGTCGAATATGCGCCACCGGCCGATCGC 20106 |||| || || | |||| |||| ||||| || | ||||||| ||||||| | Sbjct 2876 TAACTACTATCCAGTGCCCGAAGCGG---AAAAGTCCAACAAGCGCCACAGGCCGATTGG 2932 Query 20107 GATCGGCGTCCAGGGCCTGGCCGACGTTTTCATGATGCTCGGCCTCTCATTCGACGATCC 20166 || |||||||| || |||| || | ||||| | | | | | ||||| | | Sbjct 2933 AATTGGCGTCCAAGGTTTGGCGGATGCCTTCATCCTCATGCGTTACCCGTTCGA-AAGCA 2991 Query 20167 CA-AGGCGCGCGAGCTCAACAAGGGCATCTTCGAGGCCGTGTACCACGCGGCCCTCCTGG 20225 | |||| | ||| || | |||||||||||| | |||||||| || ||||| Sbjct 2992 AAGAGGCTCAGCTGCTGAATATTCAAATCTTCGAGGCCATCTACCACGCCGC---CCTGG 3048 Query 20226 AATCG---TGCGAACTCGCCAAAGAGGACGGCCCGTACGAGACGTTCAAGGGGTCGCCCG 20282 | || ||||| || ||| ||| |||||| |||||||||| | || || |||| Sbjct 3049 AGGCGAGCTGCGAGCTGGCCGCCGAGCTCGGCCCCTACGAGACGTACGCAGGCTCTCCCG 3108 Query 20283 CGTCCGAGGGTATCCTCCAGCCGGACATGTGGG-------GCGTCACTGAGAATG-AGTT 20334 | |||| ||||| ||| |||||||||| || ||| || | || | Sbjct 3109 TCAGCAAGGGCATCCTGCAGTACGACATGTGGGAGAAGAAGC-CCACCGA-ACTGCTGGA 3166 Query 20335 TTGGAGCGCCCTCAAGGTTGAGATCAAGACCCACGGGCTTCGCAACTCGTTGCTCGTCGC 20394 |||| || |||| ||||| | |||||| | | ||| |||| | || Sbjct 3167 CTGGAAGCTGCTGAAGGAGAAGATCGCCATCCACGGCGTGAGGAACAGCCTGCTGCTGGC 3226 Query 20395 GCCCATGCCGACCGCCTCGACCGCCCAGATCATGGGGAACAACGAGGCTTTCGAGCCGTA 20454 || ||||| || ||||| |||||||||||| |||| ||||||||| | |||| | || Sbjct 3227 CCCGATGCCCACGGCCTCCACCGCCCAGATCCTGGGCAACAACGAGTCCATCGAAGCCTA 3286 Query 20455 CACGACCAACATCTAC 20470 ||| | |||||||||| Sbjct 3287 CACCAGCAACATCTAC 3302 >seq25594 Length=9440 Score = 102 bits (112), Expect = 9e-17 Identities = 95/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 59991 GCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTC 60050 ||||||||| ||||| || ||||||||||| ||||| ||| ||| || || |||||| Sbjct 4858 GCTTTTGCAGCAGTGGAGGGCATCTTCTTCTCCGGCTCATTCGCTGCCATCTTTTGGCTC 4799 Query 60051 AAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAG 60110 || ||| | || || ||||| ||||| | | |||||||||||||||| ||||| ||| Sbjct 4798 AAGAAGAGAGGACTAATGCCTGGCCTTACCTACTCCAACGAGCTGATTAGTCGGGATGAG 4739 Query 60111 G 60111 | Sbjct 4738 G 4738 >seq8304 Length=64587 Score = 96.9 bits (106), Expect = 4e-15 Identities = 86/108 (80%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 79098 CTCGATGATTTCTGTGCACAAATTAGACGACTTGATGGTGCCGATGTTCTTCTGGTTGCT 79157 ||| | ||| || ||||||| ||| || ||||||||||| | |||| ||||||||| Sbjct 6203 CTCTACGATCTCCGTGCACAGATTGCTGGATTTGATGGTGCCCAGATTCTGCTGGTTGCT 6262 Query 79158 CTTCTCGTTACAGGCGTCCTTGTAGCACATGTACGGCGTCCCGGTCTC 79205 |||| ||| ||||||||||||||| |||||| ||||| ||||| || Sbjct 6263 CTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTATGGCGTGCCGGTTTC 6310 >seq13328 Length=1460 Score = 84.2 bits (92), Expect = 2e-11 Identities = 72/89 (81%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 60330 ATTTACGGCGTGAATAACCCTTTCGACTGGATGGAGACCATCTCGTTGGAAGGGAAGACC 60389 || ||| | ||| | ||||| ||||||| ||||||| |||||| |||| || |||||| Sbjct 514 ATCTACCGGGTGGAGAACCCCTTCGACTTCATGGAGAACATCTCTCTGGAGGGAAAGACC 573 Query 60390 AACTTCTTTGAGAAGCGGGTCGGGGATTA 60418 ||||||||||||||||| || || || || Sbjct 574 AACTTCTTTGAGAAGCGCGTGGGCGAGTA 602 >seq7495 Length=4655 Score = 84.2 bits (92), Expect = 2e-11 Identities = 72/89 (81%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 60330 ATTTACGGCGTGAATAACCCTTTCGACTGGATGGAGACCATCTCGTTGGAAGGGAAGACC 60389 || ||| | ||| | ||||| ||||||| ||||||| |||||| |||| || |||||| Sbjct 899 ATCTACCGGGTGGAGAACCCCTTCGACTTCATGGAGAACATCTCTCTGGAGGGAAAGACC 958 Query 60390 AACTTCTTTGAGAAGCGGGTCGGGGATTA 60418 ||||||||||||||||| || || || || Sbjct 959 AACTTCTTTGAGAAGCGCGTGGGCGAGTA 987 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548057141468640