Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20rubrivinctus_20[genbank_20GCA_5F000475215.1_202013-10-22] 68,206 sequences; 756,296,653 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq34972 199 4e-46 seq23261 86.0 7e-12 seq21176 82.4 8e-11 >seq34972 Length=31405 Score = 199 bits (220), Expect = 4e-46 Identities = 486/728 (67%), Gaps = 14/728 (2%) Strand=Plus/Plus Query 53242 TGAGACGTACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAA 53301 |||||||||| || | || | |||| || || |||||| | || || || ||||| Sbjct 1988 TGAGACGTACAACCTGCTGTCAGAGAAGTGGTTCACCCACGCCTCCCCCACGCTCTTCAA 2047 Query 53302 CGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTC 53361 ||| || || || || ||| |||| |||||||||||| | || ||||| || ||| Sbjct 2048 CGCAGGAACCAACAGGCCACAGCTGTCCAGCTGCTTCCTGCTCGCCATGAAAGACGACAG 2107 Query 53362 GATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGG 53421 ||||| ||||| ||||| ||||| ||| | || |||| ||||||||| | | || || Sbjct 2108 CATCGAAGGCATTTACGACACGCTGAAGCAATGCGCCCTCATCTCCAAATCAGCCGGGGG 2167 Query 53422 TATCGGTATCCACTGCTCGAACGTCCGTGCGAAC----GGCACACCAATCAAGGGGACGA 53477 |||||| | || || | | | |||| || | ||| || || | Sbjct 2168 AATCGGTGT----GGCGATAAGCTGCATCAGAACAACGGGGAGCTACATCGCCGGCACCA 2223 Query 53478 ACGGCGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACG 53537 ||||| | || | || |||| || ||||| | || | |||||||||||| || |||| Sbjct 2224 ACGGCAACTCCAACGGGGTCGTCCCCATGCTGAGAGTTTACAACAACACGGCACGTTACG 2283 Query 53538 TCAACCAGGGTGGTGGGAAGCG-CAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCAC 53596 || ||||||| || ||| | | ||| | | || ||||| ||||| ||||| |||||| Sbjct 2284 TCGACCAGGGCGGCAACAAGAGACCAGGAG-CCTTTGCCATGTACCTGGAGCCCTGGCAC 2342 Query 53597 GCCGACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGC 53656 |||||| | | || || || ||||| ||| || | || ||| | | | Sbjct 2343 GCCGACGTGTTTGACTTCCTGGAGCTAAAGAAGAACACCGGAAAGGAGGAGCAGAGAGCC 2402 Query 53657 CGTGACCTGTT-TACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGA 53715 | ||||| || ||| || |||||||| || ||||| |||||| | | ||||||| | Sbjct 2403 AGGGACCTTTTCTACGGC-CTGTGGATCCCCGACCTGTTCATGAAGAGAGTGGAGAGCAA 2461 Query 53716 CGAGGAGTGGTACCTGATGTGCCCGAACGAGTGCCCCGGCCTCCA-GGGTGTCTACGGTG 53774 |||||| |||| |||||||| || ||||||||||| || || | | ||| || || | Sbjct 2462 CGAGGACTGGTCTCTGATGTGTCCCAACGAGTGCCCAGGGCTGGATGAGTG-CTGGGGGG 2520 Query 53775 AGGAGTTTAACGAGATGTATCGGACGTACGCAGTTCAGGGCCGCTACAAGAAGAAGGTCA 53834 ||||||| | || | || | || | ||||| | |||| ||| | Sbjct 2521 AGGAGTTCGAAAAGCTCTACACCTCCTATGAGAAGCAGGGGAAGTTCAAGCGCGTGGTGA 2580 Query 53835 AGGCGCGTGAGGTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACA 53894 |||| | || | ||| | || | || || |||| || || || ||||| |||| Sbjct 2581 AGGCTCAGCAGTTGTGGCACGCCGTTATCGAGTCCCAGACAGAAACTGGCACGCCATACA 2640 Query 53895 TGTGCTACAAGGATTCGGTCAACGAGAAGAGCAACCAGAAGAACATCGGCGTCATCAAAT 53954 || ||||| || | |||| |||||||||||| |||| | ||| |||||| | Sbjct 2641 TGCTGTACAAAGACGCCTGCAACAGGAAGAGCAACCAACAGAATCTGGGCACCATCAAGT 2700 Query 53955 CGAGCAAC 53962 | |||||| Sbjct 2701 CCAGCAAC 2708 Score = 82.4 bits (90), Expect = 8e-11 Identities = 107/148 (72%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 55492 CCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAACAACGAGGC 55551 |||||| |||| || ||||| || || || || || |||||| |||||||||||||| | Sbjct 3215 CCTGCTGCTGGCCCCGATGCCCACGGCCTCCACCGCCCAGATCCTGGGCAACAACGAGTC 3274 Query 55552 GTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCAGGTGAGTTTGTCAT 55611 |||| | ||||| | |||||||||| ||| || ||| | || |||||| || Sbjct 3275 CATCGAAGCCTACACCAGCAACATCTACACCCGCAGGGTCCTCTCCGGAGAGTTTCAGAT 3334 Query 55612 GATCAACAAGCACCTCGTCAAGGACCTG 55639 ||||| || || |||| |||||| Sbjct 3335 CGTCAACCCTCATCTGCTCAAAGACCTG 3362 >seq23261 Length=42774 Score = 86.0 bits (94), Expect = 7e-12 Identities = 96/126 (76%), Gaps = 2/126 (2%) Strand=Plus/Plus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTG- 152087 |||||||||||||| | |||||| | |||||||| || || || ||||||||||| Sbjct 34640 GTGAAGATGTATCGAGGGCTGGCAGAGTCCTTGCCGCCGTGCAACCTGGTTCCAAACTGA 34699 Query 152088 TCCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCAC 152147 ||||| |||| | ||||| | ||||||| |||||||| ||||| |||||| || Sbjct 34700 CCCAGA-GGCTGCAACAGGTTCAAGTTGTTGCTTCCCACGAAGTTCTGGGCCAAACCAAC 34758 Query 152148 AATCGT 152153 ||| || Sbjct 34759 AATGGT 34764 >seq21176 Length=21828 Score = 82.4 bits (90), Expect = 8e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 ||||| |||||||||| ||| ||||| || ||||| ||| | || ||||| || || Sbjct 11491 GTGAAGATGTAACGAGGGCTGGCAGCGTCTTTGCCTCCATTGATGCGAGTACCAAACTGA 11550 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 || |||| || || ||| ||||||| |||||||||||| || |||||||| || Sbjct 11551 CCCAGTGGCTGCAGGATGTTGGCGTTGTTGCTGCCCACAAAGTTCTGGGCCAAGTTCACG 11610 Query 117425 ATCGT 117429 || || Sbjct 11611 ATGGT 11615 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 546749457318800