Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20rubrivinctus_20[genbank_20GCA_5F000475215.1_202013-10-22] 68,206 sequences; 756,296,653 total letters Query= NC_028379.1 Length=205896 Score E Sequences producing significant alignments: (Bits) Value seq28315 136 5e-27 seq8367 95.1 2e-14 >seq28315 Length=4498 Score = 136 bits (150), Expect = 5e-27 Identities = 264/385 (69%), Gaps = 6/385 (2%) Strand=Plus/Minus Query 13692 GAGTTTCCCATCGCCTACTCGATCGTGATCCACCACAAGATCGAGATGTTCGAGCGCCTC 13751 || |||||||| |||||||| || |||||||| ||||||| |||||||||||||| || Sbjct 730 GATTTTCCCATTGCCTACTCCATGGTGATCCATGACAAGATTGAGATGTTCGAGCGACTT 671 Query 13752 CTGAGGGCCATCTACGCCCCGCAGAACCTCTACTGCGTCCACGTGGACTCCAAGTCCGGC 13811 || | || | ||| | ||||||||| ||||||| | || |||||| || ||| Sbjct 670 CTACGAGCTGTTTACACTCCGCAGAACATCTACTGTATACATGTGGACCAGAAATCCCCT 611 Query 13812 GACGAGTTCATCCG--GGGCGTCTCGGCCATCGCCAGGTGCTTCCCTAACGTGGCCCTGG 13869 | || || || | || ||| ||| || | ||||| ||||| ||| | | Sbjct 610 AAGGAATT--TCAGAAGGCCGTGGAGGCAATTACTTCTTGCTTTCCTAATGTGTTTATTG 553 Query 13870 CCCACCGGCT-GCACGACGTGGTGTACGGCTCCTGGAGTCGCGTGCAGGCCGACCTCAGC 13928 || | || | | | || || || || | ||| ||| || || ||||| ||| | | Sbjct 552 CCAGCAGGTTAGAAAGA-GTTGTATATGCCTCATGGTCGCGGGTTCAGGCAGACTTGAAT 494 Query 13929 TGCATGTCGGACCTGGACGCCTCCCCCGTCAAGTGGAGGTACCTGCTCAACCTGTGCGGG 13988 |||||| |||| ||| | |||| |||||||||||||||| ||| || ||| Sbjct 493 TGCATGAAAAACCTCCTGAACTCACACGTCCAGTGGAGGTACCTGCTAAACACCTGTGGG 434 Query 13989 ATGGACTTCCCGCTCAAGACCAACCTGGAGATCGTGCGGGCGCTGAAGGCCCTGGGCGGC 14048 | |||||||| |||| ||||| ||||| || | ||| ||||||||||| ||| Sbjct 433 ACAGACTTCCCCATCAAAACCAATGGAGAGATTGTTCAGGCTCTGAAGGCCCTCAACGGG 374 Query 14049 AAGAACGCCCTGGAGAGCGAGGGCA 14073 | ||| | |||||| |||| || Sbjct 373 AGAAACAGCATGGAGACTGAGGCCA 349 >seq8367 Length=610 Score = 95.1 bits (104), Expect = 2e-14 Identities = 133/187 (71%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 13887 GTGGTGTACGGCTCCTGGAGTCGCGTGCAGGCCGACCTCAGCTGCATGTCGGACCTGGAC 13946 || || || | ||| ||| || |||||||| ||| | | ||||||| ||||| Sbjct 7 GTTGTATATGCCTCGTGGTCGCGGGTGCAGGCAGACTTGAACTGCATGATAGACCTAATG 66 Query 13947 GCCTCCCCCGTCAAGTGGAGGTACCTGCTCAACCTGTGCGGGATGGACTTCCCGCTCAAG 14006 ||| |||||| |||||||||||||||| ||| ||||||| |||||||| |||| Sbjct 67 AACTCACCCGTCCAGTGGAGGTACCTGCTAAACACCTGCGGGACAGACTTCCCCATCAAA 126 Query 14007 ACCAACCTGGAGATCGTGCGGGCGCTGAAGGCCCTGGGCGGCAAGAACGCCCTGGAGAGC 14066 ||||| ||||| || | ||| |||| |||||| ||| | ||| | |||||| Sbjct 127 ACCAATGGAGAGATTGTTCAGGCCCTGACGGCCCTAAACGGGAGAAACAGCATGGAGACT 186 Query 14067 GAGGGCA 14073 |||| || Sbjct 187 GAGGCCA 193 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658177575426560