Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20rubrivinctus_20[genbank_20GCA_5F000475215.1_202013-10-22] 68,206 sequences; 756,296,653 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq17722 170 2e-37 seq22339 116 3e-21 seq3570 98.7 8e-16 >seq17722 Length=45798 Score = 170 bits (188), Expect = 2e-37 Identities = 142/174 (82%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 29942 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 30001 || || |||| ||| || |||||||| ||||| || | ||||||||||| || || || Sbjct 8221 AGTCCTGTGATGTGTGCGATCATGTAGGTGAGAAGTGCATAGCTGGCGATATTGAAAGGC 8162 Query 30002 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 30061 |||||||| ||||| || || || | |||||||||||||||||| ||||| ||||||| | Sbjct 8161 ACCCCGAGACCCATATCACCAGAGCGCTGGTAGAGCTGACACGACAGCTCGCCGTCGCAC 8102 Query 30062 ACGTAAAACTGACACATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCT 30115 ||||| |||||||||| || |||||| || || |||||||||||| || |||| Sbjct 8101 ACGTAGAACTGACACAGGGTGTGGCAGGGTGGCAGAGCCATGAGGGTCAGGTCT 8048 Score = 136 bits (150), Expect = 3e-27 Identities = 136/175 (78%), Gaps = 1/175 (1%) Strand=Plus/Minus Query 30223 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30282 ||||| |||||||| || || || |||||||||||||| || ||||| ||||||||||| Sbjct 6477 CATGTTTGTGTACTCGGCCCCAAAGTGCCTCCACTGGAAACCATACACGGGTCCCAGGTC 6418 Query 30283 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 30342 || || || | | ||||||| ||||||| |||| | ||| || |||||||| Sbjct 6417 GCCTTCCTCTCGATCTGTGAAGCCCAGGTTGTCCAGGAAGTTCCGGGACCCATTGGCGTC 6358 Query 30343 CCAGATCTTTACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGA-CCCTCTGAC 30396 ||| ||||| ||||| ||| | |||||||| |||| |||||| || |||| |||| Sbjct 6357 CCAAATCTTCACCCCTTTCGCTGAGAGCTCCTTGGCGTTTGTTGATCCCTGTGAC 6303 >seq22339 Length=17516 Score = 116 bits (128), Expect = 3e-21 Identities = 87/102 (85%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 110407 TCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGGATGGAG 110466 || ||||||||||| | ||| ||||||| |||||||||| ||||| || |||||||| Sbjct 16267 TCTCTGCTGAGGACAATGTTGATCCTGTTGTTCAGAGGTCTGTTCTTCTCTGGGATGGAA 16208 Query 110467 AACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 110508 ||||| || ||||| ||||| ||||||||||||||||||||| Sbjct 16207 AACCATGTTTTTCTGCCCATGATCACCACGTTCTGCTTGCCT 16166 Score = 82.4 bits (90), Expect = 6e-11 Identities = 65/78 (83%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 110574 CCACGGCAGATCTCCGTTGTTCCCGATGCCCATGTCTGGACACGCGGCCACGATACCGTT 110633 ||| ||||| | ||| || ||||||||||||| ||| |||||| | ||||||||| |||| Sbjct 12046 CCAGGGCAGGTTTCCATTATTCCCGATGCCCAGGTCCGGACACACCGCCACGATAGCGTT 11987 Query 110634 CAGAATGAGGGGCATGGT 110651 ||||||| ||| ||| || Sbjct 11986 CAGAATGCGGGACATCGT 11969 >seq3570 Length=9272 Score = 98.7 bits (108), Expect = 8e-16 Identities = 93/119 (78%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 110159 ACTCTGGCAGTAGACGATATCTCTCTAGACTTTTCTCTGGGAGAAAAGTGTCGCACGCAA 110218 |||||||||||||||||||| | ||| |||| | || ||||| || ||||||||| ||| Sbjct 1591 ACTCTGGCAGTAGACGATATTTGTCTGGACTGATTTCAGGGAGGAACGTGTCGCACTCAA 1532 Query 110219 ATTGCGTCGACACGTGAGTGACAAACAGCCTCTTTATCCCCGGGCTCTCCATGAGCTCC 110277 | ||| || | | ||||||||||| ||| | ||||| |||||||||| | |||| Sbjct 1531 ACTGCTTCAGGATTCGCGTGACAAACAGTCTCCTGGTCCCCAGGCTCTCCATCAACTCC 1473 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405972650162952