Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20rubrivinctus_20[genbank_20GCA_5F000475215.1_202013-10-22] 68,206 sequences; 756,296,653 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq15835 100 2e-16 >seq15835 Length=21870 Score = 100 bits (110), Expect = 2e-16 Identities = 163/232 (70%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| ||||| ||||||| || | |||||||||| |||||| || ||||| || || || Sbjct 6239 GCCTCCTCTCAGACGCAGGACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGA 6180 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 || || || | ||||| || || || || ||||| || | | ||| ||||| || || Sbjct 6179 GAGGGTGCGTCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGG 6120 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAA-AATTGTGTCTTCGCTCTCCA 34657 | || |||||||| |||||| | || ||| | ||| ||||| | ||| | Sbjct 6119 AATGCCTTCCTTGTCCTGGATCTTG-GCCTTCACGTTCTCAATGGTGTCGCTGGGCTCGA 6061 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTT 34709 | || | || || || || || || | || |||||||| ||||||||||| Sbjct 6060 CCTCAAGAGTGATGGTCTTGCCAGTGAGGGTCTTCACAAAGATCTGCATGTT 6009 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314467977675998