Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20rubrivinctus_20[genbank_20GCA_5F000475215.1_202013-10-22] 68,206 sequences; 756,296,653 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq15835 138 1e-27 seq33424 105 6e-18 seq12594 91.5 1e-13 >seq15835 Length=21870 Score = 138 bits (152), Expect = 1e-27 Identities = 169/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || || || || || |||||| | || || || || || || || Sbjct 36 CATGCAGATCTTCGTTAAGACCCTCACTGGCAAGACCATCACCCTCGAGGTCGAGCCCAG 95 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 |||| | ||||||| || ||| || || || |||||||||||||| || || ||||| Sbjct 96 CGACACTATTGAGAACGTGAAAGCCAAGATCCAGGACAAAGAAGGCATTCCCCCAGATCA 155 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||| | | || | |||||||| || ||||||| || ||| | ||||| ||||| Sbjct 156 GCAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGTCGCACCCTCTCCGACTACAA 215 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| ||||||||||| ||| | ||| | || ||||| || |||| ||||| Sbjct 216 CATCCAAAAGGAGTCCACCCTCCATCTTGTGCTGCGTCTGAGGGGAGGCAT 266 >seq33424 Length=445 Score = 105 bits (116), Expect = 6e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| ||||| || || ||||| || ||| | || || || || ||||| || Sbjct 357 CATGCAGATCTTTGTGAAGACCCTGACTGGAAAGACCATCACCCTGGAGGTGGAGCCCAG 298 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| ||||| | ||||| || || ||||||||||| ||||| || || || || Sbjct 297 TGACAGCATTGAAAACGTCAAGGCCAAGATCCAAGACAAAGAGGGCATCCCTCCAGACCA 238 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 |||||| | || | || || || || |||||||| | ||| | ||||| || || Sbjct 237 GCAGCGTCTGATCTTTGCTGGAAAGCAGCTGGAAGACGGCCGCACCCTCTCCGACTATAA 178 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| || |||||||| ||| | ||| | || | ||| | | || ||||| Sbjct 177 CATCCAGAAGGAGTCCACCCTCCATCTTGTGCTCCGTCTCAGAGGAGGCAT 127 >seq12594 Length=11963 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 27005 AACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGT 27064 ||| ||||| || ||| | || || || || ||||| || ||| ||||| | || Sbjct 233 AACCCTGACTGGAAAGACCATCACCCTGGAGGTGGAGCCCAGTGACAGCATTGAAAACGT 292 Query 27065 CAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGC 27124 ||| || || ||||||||||| ||||| || || || || |||||| | || | || Sbjct 293 CAAGGCCAAGATCCAAGACAAAGAGGGCATCCCTCCAGACCAGCAGCGTCTGATCTTTGC 352 Query 27125 CGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGAC 27184 || || || |||||||| | ||| | ||||| |||||||| || |||||||| || Sbjct 353 TGGAAAGCAGCTGGAAGACGGCCGCACCCTCTCCGACTACAACATCCAGAAGGAGTCCAC 412 Query 27185 CTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 | | ||| | || | ||| | | || ||||| Sbjct 413 CCTCCATCTTGTGCTCCGTCTCAGAGGAGGCAT 445 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434547599445120