Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20rubrivinctus_20[genbank_20GCA_5F000475215.1_202013-10-22] 68,206 sequences; 756,296,653 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq17722 131 2e-25 >seq17722 Length=45798 Score = 131 bits (144), Expect = 2e-25 Identities = 120/152 (79%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 34295 ACGAACACCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGACGCTCACGGGTCTCGA 34354 || ||| ||||||||||||| | ||||||||||| |||||||| | ||||| || Sbjct 6316 ACAAACGCCAAGGAGCTCTCAGCGAAAGGGGTGAAGATTTGGGACGCCAATGGGTCCCGG 6375 Query 34355 GACTTTCTGGACAAGCGGGGGTTCCCATCTCGGGAGGAGGGCGACTTGGGCCCGGTCTAC 34414 |||| |||||||| | ||| ||| || ||| ||||| |||||| |||| || || || Sbjct 6376 AACTTCCTGGACAACCTGGGCTTCACAGATCGAGAGGAAGGCGACCTGGGACCCGTGTAT 6435 Query 34415 GGGTTCCAGTGGAGACACTTTGGGGCGGAGTA 34446 || ||||||||||| ||||||||||| ||||| Sbjct 6436 GGTTTCCAGTGGAGGCACTTTGGGGCCGAGTA 6467 Score = 131 bits (144), Expect = 2e-25 Identities = 120/152 (79%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 6899 TACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCC 6958 ||||| ||||||||||| ||||||||||| || || || || |||| |||||| ||||| Sbjct 6467 TACTCGGCCCCAAAGTGCCTCCACTGGAAACCATACACGGGTCCCAGGTCGCCTTCCTCT 6408 Query 6959 CGAGATGGGAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTC 7018 ||| || ||| ||| | |||||||| |||| || ||||| | |||||||| |||||| Sbjct 6407 CGATCTGTGAAGCCCAGGTTGTCCAGGAAGTTCCGGGACCCATTGGCGTCCCAAATCTTC 6348 Query 7019 ACCCCCCGGGACGAGAGCTCCTTGGTGTTCGT 7050 ||||| | ||||||||||||| ||| || Sbjct 6347 ACCCCTTTCGCTGAGAGCTCCTTGGCGTTTGT 6316 Score = 116 bits (128), Expect = 3e-21 Identities = 119/153 (78%), Gaps = 2/153 (1%) Strand=Plus/Plus Query 34574 CTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGT-CGCGAATGGGGAGCT 34632 || ||||| || || || ||||||||||| || || |||||||| ||| | || ||||| Sbjct 8058 CTCATGGCTCTGCCACCCTGCCACACCCTGTGTCAGTTCTACGTGTGCG-ACGGCGAGCT 8116 Query 34633 GTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGC 34692 ||| || |||||||| || || || || || ||||| | |||||||| ||||| || || Sbjct 8117 GTCGTGTCAGCTCTACCAGCGCTCTGGTGATATGGGTCTCGGGGTGCCTTTCAATATCGC 8176 Query 34693 TAGTTACGCTCTGCTCACGTACATGATCGCTCA 34725 || || || || ||||| ||||||||||| || Sbjct 8177 CAGCTATGCACTTCTCACCTACATGATCGCACA 8209 Score = 116 bits (128), Expect = 3e-21 Identities = 119/153 (78%), Gaps = 2/153 (1%) Strand=Plus/Minus Query 6620 TGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCC 6679 || ||||||||||| ||||| || || || || || || ||||| |||||||| | ||| Sbjct 8209 TGTGCGATCATGTAGGTGAGAAGTGCATAGCTGGCGATATTGAAAGGCACCCCGAGACCC 8150 Query 6680 ATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCG-ACGTAGAATTG 6738 || || || || || || |||||||| || |||||||| || | ||| |||||||| || Sbjct 8149 ATATCACCAGAGCGCTGGTAGAGCTGACACGACAGCTCGCCGT-CGCACACGTAGAACTG 8091 Query 6739 GCAGAGGGTGTGGCACGGGGGGAGCGCCATCAG 6771 || ||||||||||| || || || ||||| || Sbjct 8090 ACACAGGGTGTGGCAGGGTGGCAGAGCCATGAG 8058 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447880222684320