Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20rubrivinctus_20[genbank_20GCA_5F000475215.1_202013-10-22] 68,206 sequences; 756,296,653 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq15835 185 2e-41 seq27301 163 7e-35 seq33424 158 3e-33 seq12594 147 5e-30 seq55772 89.7 1e-12 seq6092 89.7 1e-12 >seq15835 Length=21870 Score = 185 bits (204), Expect = 2e-41 Identities = 170/215 (79%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| || || ||||||||||| || |||||||| || || | ||||| | ||||||| Sbjct 6223 AGGACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGTCCATCT 6164 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| || ||||| || | || ||||| || |||| |||||||||||| Sbjct 6163 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCC 6104 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| |||||||| || |||||||| | || ||||| |||||||| ||| Sbjct 6103 TGGATCTTGGCCTTCACGTTCTCAATGGTGTCGCTGGGCTCGACCTCAAGAGTGATGGTC 6044 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || || ||||| ||||| ||||| | |||||| || Sbjct 6043 TTGCCAGTGAGGGTCTTCACAAAGATCTGCATGTT 6009 Score = 176 bits (194), Expect = 1e-38 Identities = 166/212 (78%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 |||||||| || || || ||||| || |||||||| || || | ||||| | |||||| Sbjct 6679 AGGACAAGATGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCT 6620 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| || ||||| || | || || || || |||| |||||||||||| Sbjct 6619 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGGGGAATGCCTTCCTTGTCC 6560 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| ||||||||| || |||||||| | ||||||||| || ||||| ||| Sbjct 6559 TGGATCTTGGCTTTCACGTTCTCAATGGTGTCGCTGGGTTCAACCTCCAGGGTGATGGTC 6500 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || ||||| ||||| || || | |||||| Sbjct 6499 TTGCCAGTGAGGGTCTTAACGAAGATCTGCAT 6468 Score = 167 bits (184), Expect = 5e-36 Identities = 164/212 (77%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || ||||| || || |||||||| ||||||||||| || || | ||||| | |||||| Sbjct 248 AGCACAAGATGGAGGGTGGACTCCTTTTGGATGTTGTAGTCGGAGAGGGTGCGACCATCT 189 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| || ||||| || | || || || || |||| ||||| |||||| Sbjct 188 TCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCTGGGGGAATGCCTTCTTTGTCC 129 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| ||||||||| || || ||||| | || |||||||| ||||| ||| Sbjct 128 TGGATCTTGGCTTTCACGTTCTCAATAGTGTCGCTGGGCTCGACCTCGAGGGTGATGGTC 69 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || ||||| ||||| || || | |||||| Sbjct 68 TTGCCAGTGAGGGTCTTAACGAAGATCTGCAT 37 Score = 161 bits (178), Expect = 2e-34 Identities = 163/212 (77%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || ||||| || || |||||||| || |||||||| || || | ||||| | |||||| Sbjct 6907 AGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCT 6848 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| || ||||| || | || || || || |||| |||||||||||| Sbjct 6847 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGGGGAATGCCTTCCTTGTCC 6788 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| |||||||| || |||||||| | || ||||| || ||||| ||| Sbjct 6787 TGGATCTTGGCCTTCACGTTCTCAATGGTGTCGCTGGGCTCGACCTCCAGGGTGATGGTC 6728 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || ||||| ||||| || || | |||||| Sbjct 6727 TTGCCAGTGAGGGTCTTAACGAAGATCTGCAT 6696 Score = 152 bits (168), Expect = 1e-31 Identities = 161/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 |||||||| || || || || ||||| |||||||| || || | ||||| | |||||| Sbjct 6451 AGGACAAGATGGAGGGTAGATTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGACCATCT 6392 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| || ||||| || | || ||||| || |||| |||||||| ||| Sbjct 6391 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCCTTATCC 6332 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || || || || |||||||| | || ||||| || ||||| ||| Sbjct 6331 TGGATCTTGGCCTTAACATTCTCAATGGTGTCGCTGGGCTCGACCTCCAGGGTGATGGTC 6272 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || ||||| ||||| || || | |||||| Sbjct 6271 TTGCCAGTGAGGGTCTTAACGAAGATCTGCAT 6240 >seq27301 Length=2015 Score = 163 bits (180), Expect = 7e-35 Identities = 165/215 (77%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || ||||| || || |||||||| || |||||||| || || | ||||| | || ||| Sbjct 1859 AGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCT 1800 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||||||||| || || ||||| || || || ||||| ||||| | |||||||| ||| Sbjct 1799 TCCAGCTGCTTTCCAGCAAAGATCAGACGCTGCTGGTCTGGAGGGATGCCTTCCTTATCC 1740 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| ||| || ||||| ||||||||| | || ||||| | ||||| ||| Sbjct 1739 TGGATCTTGGCTTTGACATTTTCAATGGTGTCACTGGGCTCCACCTCCAAGGTGATGGTC 1680 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || || || || ||||| ||||| | ||||||||| Sbjct 1679 TTCCCGGTCAGGGTCTTCACAAAGATCTGCATTTT 1645 Score = 95.1 bits (104), Expect = 3e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 210975 CCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGT 211034 || || ||||| || || || ||||| ||||| | || || |||||||||||||| Sbjct 2015 CCAGCAAAGATCAGACGCTGCTGGTCTGGAGGGATGCCCTCTTTGTCCTGGATCTTGGCC 1956 Query 211035 TTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGA 211094 || || ||||| |||| |||| | || ||||| || ||||| |||||||| || || Sbjct 1955 TTGACATTTTCAATGGAGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTTCCGGTCAGG 1896 Query 211095 GTCTTTACAAACACCTGCAT 211114 ||||| ||||| | |||||| Sbjct 1895 GTCTTCACAAAGATCTGCAT 1876 >seq33424 Length=445 Score = 158 bits (174), Expect = 3e-33 Identities = 162/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || ||||| || || |||||||| || ||||||||||| || | ||||| | || ||| Sbjct 145 AGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTATAGTCGGAGAGGGTGCGGCCGTCT 204 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||||||||| || || ||||| || || || ||||| ||||| | || || ||||| Sbjct 205 TCCAGCTGCTTTCCAGCAAAGATCAGACGCTGCTGGTCTGGAGGGATGCCCTCTTTGTCT 264 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || |||||||| ||| ||||| | || ||||| || ||||| ||| Sbjct 265 TGGATCTTGGCCTTGACGTTTTCAATGCTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 324 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| || || ||||| ||||| | |||||| Sbjct 325 TTTCCAGTCAGGGTCTTCACAAAGATCTGCAT 356 Score = 91.5 bits (100), Expect = 3e-13 Identities = 97/128 (76%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 210987 AGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCG 211046 || || || ||||| ||||| | |||||||| ||||||||||| || || ||||| Sbjct 1 AGACGCTGCTGGTCTGGAGGGATGCCTTCCTTATCCTGGATCTTGGCCTTGACATTTTCA 60 Query 211047 ATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAAC 211106 ||||||||| | || ||||| || ||||| |||||||| || || ||||| || || Sbjct 61 ATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTTCCAGTCAGGGTCTTGACGAAG 120 Query 211107 ACCTGCAT 211114 | |||||| Sbjct 121 ATCTGCAT 128 >seq12594 Length=11963 Score = 147 bits (162), Expect = 5e-30 Identities = 146/189 (77%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 210926 TTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGAT 210985 ||| ||||||||||| || | ||||| | || |||||||||||||| || || ||||| Sbjct 632 TTTCTGGATGTTATAGTCGGAGAGGGTGCGACCGTCTTCCAGCTGCTTTCCAGCAAAGAT 573 Query 210986 AAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTC 211045 || || || ||||| ||||| | |||||||| ||||||||||| || |||||||| Sbjct 572 CAGACGCTGCTGGTCTGGAGGGATGCCTTCCTTATCCTGGATCTTGGCCTTGACGTTTTC 513 Query 211046 GATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAA 211105 ||| ||||| | || ||||| || ||||| |||||||| || || ||||| ||||| Sbjct 512 AATGCTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTTCCAGTCAGGGTCTTCACAAA 453 Query 211106 CACCTGCAT 211114 | |||||| Sbjct 452 GATCTGCAT 444 Score = 141 bits (156), Expect = 2e-28 Identities = 153/203 (75%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 210912 TGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGC 210971 || || ||||| ||||| |||||||| || || | ||||| | || |||||||||||| Sbjct 233 TGGAGGGTGGATTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGACCGTCTTCCAGCTGC 174 Query 210972 TTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTT 211031 || || || ||||| || || || ||||| ||||| | || ||||| ||||||||||| Sbjct 173 TTTCCAGCAAAGATCAGACGCTGCTGGTCTGGAGGGATGCCCTCCTTATCCTGGATCTTG 114 Query 211032 TGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTG 211091 || |||||||| || | |||| | || ||||| || ||||| |||||||| || Sbjct 113 GCCTTGACGTTTTCAATTGAGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTTCCAGTA 54 Query 211092 AGAGTCTTTACAAACACCTGCAT 211114 || ||||| || || | |||||| Sbjct 53 AGGGTCTTCACGAAGATCTGCAT 31 Score = 134 bits (148), Expect = 3e-26 Identities = 146/194 (75%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || ||||| || || |||||||| || |||||||| || || | ||||| | || ||| Sbjct 427 AGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCT 368 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||||||||| || || ||||| || || || ||||| ||||| | || || ||||| Sbjct 367 TCCAGCTGCTTTCCAGCAAAGATCAGACGCTGCTGGTCTGGAGGGATGCCCTCTTTGTCT 308 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || |||||||| ||| ||||| | || ||||| || ||||| ||| Sbjct 307 TGGATCTTGGCCTTGACGTTTTCAATGCTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 248 Query 211083 TTTCCCGTGAGAGT 211096 ||||| || || || Sbjct 247 TTTCCAGTCAGGGT 234 Score = 104 bits (114), Expect = 5e-17 Identities = 101/129 (78%), Gaps = 1/129 (1%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || ||||| || ||||||||||| || |||||||| || || | ||||| | |||||| Sbjct 749 AGCACAAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGACCATCT 690 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTT-GTC 211021 ||||||||||| || || ||||| || || || ||||| ||||| | |||||||| | Sbjct 689 TCCAGCTGCTTTCCAGCAAAGATCAGACGCTGCTGGTCTGGAGGGATGCCTTCCTTATTT 630 Query 211022 CTGGATCTT 211030 |||||| || Sbjct 629 CTGGATGTT 621 >seq55772 Length=1945 Score = 89.7 bits (98), Expect = 1e-12 Identities = 84/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 211011 CCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCG 211070 ||||||||||||||||||||| || || |||||||| |||||| | |||||||| Sbjct 1105 CCTTCCTTGTCCTGGATCTTTGCCTTGACATTTTCGATAGTGTCACTGGGCTCAACCTCA 1164 Query 211071 AGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || ||||| ||||| ||||| | ||||| || || | |||||| || Sbjct 1165 AGGGTGATGGTCTTCCCCGTCAACGTCTTCACGAAGATCTGCATGTT 1211 >seq6092 Length=85191 Score = 89.7 bits (98), Expect = 1e-12 Identities = 138/194 (71%), Gaps = 6/194 (3%) Strand=Plus/Plus Query 139822 GGAAGAGGAGGACAATCTGCTCTGCGTTTTGAAAGACTTCGAAAGGAAAAGAGGCACAAC 139881 || |||||||| || |||||||||||||||| | || ||| ||| ||||| |||||| Sbjct 77434 GGCAGAGGAGGGCAGTCTGCTCTGCGTTTTGCTCGTCTGAGAATGGAGAAGAGACACAAC 77493 Query 139882 TACTTGAGAAAAGTTGCAGAGAACGCAATACAGTGTTTTAT---CAAAGACAACAAGTGT 139938 ||| ||||||| || || |||| || | ||| ||| | ||| |||| |||| | Sbjct 77494 TACGTGAGAAAGGTGGCTGAGACGGCTGTCCAGCTCTTTGTGTCCAACGACA--AAGT-T 77550 Query 139939 TTTGTTTCTGGTATTGTTTTGGCAGGTTCCGCAGAGTTCAAGACAAAGCTCCTGGAATCT 139998 ||| | || || || ||||| || || || || |||||||| ||||| | || Sbjct 77551 AATGTGGCAGGAATGGTCTTGGCTGGCTCTGCTGACTTCAAGACCGAGCTCAGCCAGTCG 77610 Query 139999 GACTTTTTTGACCC 140012 ||| | || ||||| Sbjct 77611 GACATGTTCGACCC 77624 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1158139029383190