Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20rubrivinctus_20[genbank_20GCA_5F000475215.1_202013-10-22] 68,206 sequences; 756,296,653 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq33424 114 1e-20 seq27301 104 2e-17 seq12594 93.3 4e-14 >seq33424 Length=445 Score = 114 bits (126), Expect = 1e-20 Identities = 166/232 (72%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 39054 CAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATC 39113 || ||||||||| | || | ||| | ||| || ||| ||| || || || ||||| || Sbjct 126 CATGCCTCCTCTGAGACGGAGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTATAGTC 185 Query 39114 GGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGT 39173 || || || || |||| || ||||| || || ||||| || |||||||||||||| | Sbjct 186 GGAGAGGGTGCGGCCGTCTTCCAGCTGCTTTCCAGCAAAGATCAGACGCTGCTGGTCTGG 245 Query 39174 GGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCG-TATCGCTCGACT 39232 || | || ||||||||| ||| || |||| ||| || | | || || | || Sbjct 246 AGGGATGCCCTCTTTGTCTTGGATCTTGGCCTTGA-CGTTTTCAATGCTGTCACTGGGCT 304 Query 39233 CCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 |||| |||| ||||| | ||||| ||||| || || |||||||| ||||| Sbjct 305 CCACCTCCAGGGTGATGGTCTTTCCAGTCAGGGTCTTCACAAAGATCTGCAT 356 >seq27301 Length=2015 Score = 104 bits (114), Expect = 2e-17 Identities = 165/237 (70%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 39054 CAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATC 39113 || ||||||||| | || | ||| | ||| || ||| ||| || || || || || || Sbjct 1878 CATGCCTCCTCTGAGACGGAGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTC 1819 Query 39114 GGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGT 39173 || || || || |||| || ||||| || || ||||| || |||||||||||||| | Sbjct 1818 GGAGAGGGTGCGGCCGTCTTCCAGCTGCTTTCCAGCAAAGATCAGACGCTGCTGGTCTGG 1759 Query 39174 GGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTC 39233 || | || || || ||| ||| || ||||| | | | || || || | ||| Sbjct 1758 AGGGATGCCTTCCTTATCCTGGATCTTGGCTTTGACATTTTCAATGGTGTCACTGGGCTC 1699 Query 39234 CACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTTTAC 39290 ||| |||| ||||| | || || ||||| || || |||||||| ||||| || || Sbjct 1698 CACCTCCAAGGTGATGGTCTTCCCGGTCAGGGTCTTCACAAAGATCTGCATTTTGAC 1642 >seq12594 Length=11963 Score = 93.3 bits (102), Expect = 4e-14 Identities = 151/215 (70%), Gaps = 2/215 (1%) Strand=Plus/Minus Query 39054 CAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATC 39113 || ||||||||| | || | ||| | ||| || ||| ||| || || || || || || Sbjct 446 CATGCCTCCTCTGAGACGGAGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTC 387 Query 39114 GGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGT 39173 || || || || |||| || ||||| || || ||||| || |||||||||||||| | Sbjct 386 GGAGAGGGTGCGGCCGTCTTCCAGCTGCTTTCCAGCAAAGATCAGACGCTGCTGGTCTGG 327 Query 39174 GGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCG-TATCGCTCGACT 39232 || | || ||||||||| ||| || |||| ||| || | | || || | || Sbjct 326 AGGGATGCCCTCTTTGTCTTGGATCTTGGCCTTGA-CGTTTTCAATGCTGTCACTGGGCT 268 Query 39233 CCACGTCCACCGTGATACTTTTTCCCGTCAGCGTT 39267 |||| |||| ||||| | ||||| ||||| ||| Sbjct 267 CCACCTCCAGGGTGATGGTCTTTCCAGTCAGGGTT 233 Score = 87.8 bits (96), Expect = 2e-12 Identities = 135/190 (71%), Gaps = 2/190 (1%) Strand=Plus/Minus Query 39096 TTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATAT 39155 ||| || || ||||| |||| || || || |||| || ||||| || || ||||| || Sbjct 632 TTTCTGGATGTTATAGTCGGAGAGGGTGCGACCGTCTTCCAGCTGCTTTCCAGCAAAGAT 573 Query 39156 AAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGC 39215 |||||||||||||| | || | || || || ||| ||| || |||| ||| Sbjct 572 CAGACGCTGCTGGTCTGGAGGGATGCCTTCCTTATCCTGGATCTTGGCCTTGA-CGTTTT 514 Query 39216 CACCG-TATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAA 39274 || | | || || | |||||| |||| ||||| | ||||| ||||| || || |||| Sbjct 513 CAATGCTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTTCCAGTCAGGGTCTTCACAA 454 Query 39275 AGATTTGCAT 39284 |||| ||||| Sbjct 453 AGATCTGCAT 444 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429188535656078