Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20rubrivinctus_20[genbank_20GCA_5F000475215.1_202013-10-22] 68,206 sequences; 756,296,653 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq17722 156 3e-33 seq22339 107 2e-18 seq3570 98.7 8e-16 seq64275 82.4 6e-11 >seq17722 Length=45798 Score = 156 bits (172), Expect = 3e-33 Identities = 133/164 (81%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 29714 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGC 29773 || || |||| ||| || |||||||| ||||| || | ||||||||||| || || ||| Sbjct 8221 AGTCCTGTGATGTGTGCGATCATGTAGGTGAGAAGTGCATAGCTGGCGATATTGAAAGGC 8162 Query 29774 ACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTC 29833 |||||||| ||||| || || || | |||||||||||| ||||| ||||| ||||||| | Sbjct 8161 ACCCCGAGACCCATATCACCAGAGCGCTGGTAGAGCTGACACGACAGCTCGCCGTCGCAC 8102 Query 29834 ACGTAAAACTGACACATGGCATGGCACGGAGGAAGGGCCATGAG 29877 ||||| |||||||||| || ||||| || || || |||||||| Sbjct 8101 ACGTAGAACTGACACAGGGTGTGGCAGGGTGGCAGAGCCATGAG 8058 Score = 120 bits (132), Expect = 2e-22 Identities = 119/153 (78%), Gaps = 1/153 (1%) Strand=Plus/Minus Query 30017 AAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAG 30076 || |||||||||||||| || ||||| ||||||||||| || || || | | |||| Sbjct 6455 AAGTGCCTCCACTGGAAACCATACACGGGTCCCAGGTCGCCTTCCTCTCGATCTGTGAAG 6396 Query 30077 CCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCG 30136 ||| ||||||| |||| | ||| || ||||||||||| ||||| ||||| ||| | Sbjct 6395 CCCAGGTTGTCCAGGAAGTTCCGGGACCCATTGGCGTCCCAAATCTTCACCCCTTTCGCT 6336 Query 30137 GAGAGCTCTTTGGAGTTTGTGGA-CCCTCTGAC 30168 |||||||| |||| |||||| || |||| |||| Sbjct 6335 GAGAGCTCCTTGGCGTTTGTTGATCCCTGTGAC 6303 >seq22339 Length=17516 Score = 107 bits (118), Expect = 2e-18 Identities = 85/102 (83%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 114290 TCCCTGCTGAGGACTACGTTTAGCCTGTCTCTCAGAGGTCTATTCTTTTCGGGGATGGAG 114349 || ||||||||||| | ||| | ||||| |||||||||| ||||| || |||||||| Sbjct 16267 TCTCTGCTGAGGACAATGTTGATCCTGTTGTTCAGAGGTCTGTTCTTCTCTGGGATGGAA 16208 Query 114350 AACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTACCT 114391 ||||| || ||||| ||||| ||||||||||||||||| ||| Sbjct 16207 AACCATGTTTTTCTGCCCATGATCACCACGTTCTGCTTGCCT 16166 Score = 89.7 bits (98), Expect = 4e-13 Identities = 75/92 (82%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 114443 AGTCTCACCGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATGTCTGGACACGCT 114502 ||||| ||||| ||| ||||| | ||| || ||||||||||||| ||| |||||| | Sbjct 12060 AGTCTAACCGGCGTCCAGGGCAGGTTTCCATTATTCCCGATGCCCAGGTCCGGACACACC 12001 Query 114503 GCCACGATACCGTTCAGAATGAGGGGCATGGT 114534 ||||||||| ||||||||||| ||| ||| || Sbjct 12000 GCCACGATAGCGTTCAGAATGCGGGACATCGT 11969 >seq3570 Length=9272 Score = 98.7 bits (108), Expect = 8e-16 Identities = 93/119 (78%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 114042 ACTCTGGCAGTAGACGATATCTCTCTAGACTTTTCTCTGGGAGAAAAATGTCGCACGCAA 114101 |||||||||||||||||||| | ||| |||| | || ||||| || |||||||| ||| Sbjct 1591 ACTCTGGCAGTAGACGATATTTGTCTGGACTGATTTCAGGGAGGAACGTGTCGCACTCAA 1532 Query 114102 ATTGCGTCGACACGTGAGTGACAAACAGCCTCTTTGTCCCCGGGCTCTCCATGAGCTCC 114160 | ||| || | | ||||||||||| ||| | |||||| |||||||||| | |||| Sbjct 1531 ACTGCTTCAGGATTCGCGTGACAAACAGTCTCCTGGTCCCCAGGCTCTCCATCAACTCC 1473 >seq64275 Length=1188 Score = 82.4 bits (90), Expect = 6e-11 Identities = 98/134 (73%), Gaps = 13/134 (10%) Strand=Plus/Minus Query 70793 GGGAACGTGGCCTGGATGCACCTCTTGGCTGCCAGGGCGCTGCTGGCTGGGAGAGAGAGC 70852 || ||||||||||||||||| | | || ||| | || ||| ||||||| Sbjct 777 GGCAACGTGGCCTGGATGCATGTACTCGCAGCCCGAGCCCTG-----------AGAGAGC 729 Query 70853 GCCCGCAAG--GTCAACGGAGAGTCCTTCTTTTGCTACGACGACTCACCATACATGAGCT 70910 ||||||| ||| || || || ||||| ||||||||||||||||| |||| || || Sbjct 728 GCCCGCAGACAGTCGGAGGTGAATCTTTCTTCTGCTACGACGACTCACCCTACAAGAACT 669 Query 70911 ATGACGCCTTCAAC 70924 |||||| ||||||| Sbjct 668 ATGACGACTTCAAC 655 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405825572524516