Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20rubrivinctus_20[genbank_20GCA_5F000475215.1_202013-10-22] 68,206 sequences; 756,296,653 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq17722 156 3e-33 seq23708 104 2e-17 seq63592 93.3 3e-14 seq40530 86.0 5e-12 >seq17722 Length=45798 Score = 156 bits (172), Expect = 3e-33 Identities = 139/174 (80%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 27208 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 27267 || || |||| ||| || |||||||| ||||| || | ||||||||||| || || || Sbjct 8221 AGTCCTGTGATGTGTGCGATCATGTAGGTGAGAAGTGCATAGCTGGCGATATTGAAAGGC 8162 Query 27268 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTT 27327 |||||||| ||||| || || || | |||||||||||||||||| ||||| || |||| Sbjct 8161 ACCCCGAGACCCATATCACCAGAGCGCTGGTAGAGCTGACACGACAGCTCGCCGTCGCAC 8102 Query 27328 ACGTAAAACTGACATATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCT 27381 ||||| |||||||| | || |||||| || || |||||||||||| || |||| Sbjct 8101 ACGTAGAACTGACACAGGGTGTGGCAGGGTGGCAGAGCCATGAGGGTCAGGTCT 8048 Score = 132 bits (146), Expect = 4e-26 Identities = 135/175 (77%), Gaps = 1/175 (1%) Strand=Plus/Minus Query 27489 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTC 27548 ||||| |||||||| || || || |||||||| ||||| || ||||| ||||||||||| Sbjct 6477 CATGTTTGTGTACTCGGCCCCAAAGTGCCTCCACTGGAAACCATACACGGGTCCCAGGTC 6418 Query 27549 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 27608 || || || | | ||||||| ||||||| |||| | ||| || |||||||| Sbjct 6417 GCCTTCCTCTCGATCTGTGAAGCCCAGGTTGTCCAGGAAGTTCCGGGACCCATTGGCGTC 6358 Query 27609 CCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGA-CCCTCTGAC 27662 ||| ||||| ||||| ||| | |||||||| |||| |||||| || |||| |||| Sbjct 6357 CCAAATCTTCACCCCTTTCGCTGAGAGCTCCTTGGCGTTTGTTGATCCCTGTGAC 6303 >seq23708 Length=597 Score = 104 bits (114), Expect = 2e-17 Identities = 167/240 (70%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 69074 GGTGAACGGATGGGGAAAGTTTTATATCCCCACCGCCGTGACGATGCAGGTCATCGGTTA 69133 |||||| || ||||| || || || | ||| | || | |||||||| | ||| Sbjct 56 GGTGAATGGGTGGGGGAAATTCTACCTTCCCGAAGTAGTAAGCATGCAGGTTGTAGGTGT 115 Query 69134 TGTGACGGGAACTCCATACCAATGTGACCAGCTTGTCCTGATGACCTGCGAGGACCAGAA 69193 ||| ||| || | | || | ||||||||||||| ||||||||||| |||||| || Sbjct 116 AGTGGAGGGGACCTCGTGCCCAAGTGACCAGCTTGTTCTGATGACCTGTGAGGACAGAAA 175 Query 69194 GGTGTACGGCTATGACGGAGACGAGCTGCATGTGGTGGCTAACTGTCTGGATCAGATGGG 69253 |||||| | ||| || ||||| |||||||| |||||||| | ||| ||| Sbjct 176 GGTGTATGCCTACGATGGAGAGAAGCTGCATTTGGTGGCTTCAAGCCTGAGGCAGCAACA 235 Query 69254 GGAAGAAGGAATAGCCTATCCTGCATTCCAGAGCTATTATCATGGGGAGGCCTTCAAACA 69313 | | |||||| ||||| ||| |||| ||||| | ||||||||||||||||| Sbjct 236 TTACAAGGGAATAAAGTATCCAGCACCGAAGAGATATTACAAAGGGGAGGCCTTCAAACA 295 >seq63592 Length=1432 Score = 93.3 bits (102), Expect = 3e-14 Identities = 167/244 (68%), Gaps = 0/244 (0%) Strand=Plus/Plus Query 69074 GGTGAACGGATGGGGAAAGTTTTATATCCCCACCGCCGTGACGATGCAGGTCATCGGTTA 69133 |||| | || ||||| ||||| || | ||| || | |||||||| | ||| Sbjct 1079 GGTGGATGGGTGGGGGAAGTTCTACCTTCCCGAGATAGTAAGCATGCAGGTTTTAGGTGT 1138 Query 69134 TGTGACGGGAACTCCATACCAATGTGACCAGCTTGTCCTGATGACCTGCGAGGACCAGAA 69193 ||| ||| || | | || ||||||||||||| ||||||||||| |||||| || Sbjct 1139 AGTGGAGGGGACCTCGTGCCTGAGTGACCAGCTTGTTCTGATGACCTGTGAGGACAGAAA 1198 Query 69194 GGTGTACGGCTATGACGGAGACGAGCTGCATGTGGTGGCTAACTGTCTGGATCAGATGGG 69253 | |||| | ||| || ||||| |||||||| |||||||| | ||| ||| | Sbjct 1199 GCTGTATGCCTACGATGGAGAGAAGCTGCATCTGGTGGCTTCAAGCCTGAGGCAGCTACA 1258 Query 69254 GGAAGAAGGAATAGCCTATCCTGCATTCCAGAGCTATTATCATGGGGAGGCCTTCAAACA 69313 | | |||||| ||||| ||| |||| ||||| | |||||||||| |||||| Sbjct 1259 TTACAAGGGAATAAAGTATCCAGCACCGAAGAGATATTACGAGGGGGAGGCCTACAAACA 1318 Query 69314 TATG 69317 ||| Sbjct 1319 CATG 1322 >seq40530 Length=2282 Score = 86.0 bits (94), Expect = 5e-12 Identities = 163/240 (68%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 69074 GGTGAACGGATGGGGAAAGTTTTATATCCCCACCGCCGTGACGATGCAGGTCATCGGTTA 69133 |||||| || ||||| || || || | ||| || | |||||||| | ||| Sbjct 1344 GGTGAATGGGTGGGGGAAATTCTACCTTCCCGAGATAGTAAGCATGCAGGTTGTAGGTGT 1285 Query 69134 TGTGACGGGAACTCCATACCAATGTGACCAGCTTGTCCTGATGACCTGCGAGGACCAGAA 69193 ||| ||| || | | || ||||||||||||| ||||||||||| |||||| || Sbjct 1284 AGTGGAGGGGACCTCGTGCCCGAGTGACCAGCTTGTTCTGATGACCTGTGAGGACAGAAA 1225 Query 69194 GGTGTACGGCTATGACGGAGACGAGCTGCATGTGGTGGCTAACTGTCTGGATCAGATGGG 69253 | |||| | ||| || ||| | ||||||| ||||| || | ||| ||| | Sbjct 1224 GCTGTATGCCTACGATGGACAGATGCTGCATTTGGTGTCTTTAAGCCTGAGGCAGCTACA 1165 Query 69254 GGAAGAAGGAATAGCCTATCCTGCATTCCAGAGCTATTATCATGGGGAGGCCTTCAAACA 69313 | | ||||||| ||||| ||| | |||| ||||| ||||||||||||||||| Sbjct 1164 TTACAACGGAATAGAGTATCCAGCACTGGAGAGATATTACAGAGGGGAGGCCTTCAAACA 1105 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369200043213986