Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20rubrivinctus_20[genbank_20GCA_5F000475215.1_202013-10-22] 68,206 sequences; 756,296,653 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq34972 372 4e-98 seq8304 98.7 1e-15 seq25594 84.2 3e-11 >seq34972 Length=31405 Score = 372 bits (412), Expect = 4e-98 Identities = 1269/1963 (65%), Gaps = 27/1963 (1%) Strand=Plus/Minus Query 77061 TTCTTTATATCATCATTCCACAATTTCCTCTCTGTTAAAACTCTAAGGAGATGAGGATTA 77120 ||||| || || || |||||| ||||| || | || | || |||||||| || Sbjct 3397 TTCTTCATCTCCTCGCTCCACAGCCCTCTCTCCGTCAGGTCTTTGAGCAGATGAGGGTTG 3338 Query 77121 ACTATTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCC 77180 || || ||||| ||||| || | || || || ||||| || || ||||| || | ||| Sbjct 3337 ACGATCTGAAACTCTCCGGAGAGGACCCTGCGGGTGTAGATGTTGCTGGTGTAGGCTTCG 3278 Query 77181 ACAGATTCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAAT 77240 | || || ||||| |||| || || || || || || || ||||| || |||| || Sbjct 3277 ATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGCATCGGGGCCAGCAGC 3218 Query 77241 AAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGA 77300 | || || || | || || | ||| || || || || ||||| ||| || Sbjct 3217 AGGCTGTTCCTCACGCCGTGGATGGCGATCTTCTCCTTCAGCAGCTTCCAGTCCAGCAGT 3158 Query 77301 TCTGAAGG-TACAACATCCCAAAGATCGTATTGTAGAATTCCGTTACTAGCATATGATCC 77359 || | || | | | ||||| | ||||| || || || || || || | || || Sbjct 3157 TCGGTGGGCTTCTTC-TCCCACATGTCGTACTGCAGGATGCCCTTGCTGACGGGAGAGCC 3099 Query 77360 ATTATATGTTTCATAAGGTCCT---TCTGTTTCAGCTAGTTCACAACTCGCTTCCAATGC 77416 || || || || || || || | | || || || || ||||| |||| || Sbjct 3098 TGCGTACGTCTCGTAGGGGCCGAGCTCGG---CGGCCAGCTCGCAGCTCGCCTCCAGGGC 3042 Query 77417 TCCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCAATACTATCAAA 77476 ||| || || | ||||| || | |||| || || || || | || || || Sbjct 3041 GGCGTGGTAGATGGCCTCGAAGATTTGAATATTCAGCAGCTGAGCCTCTTTGCTTTCGAA 2982 Query 77477 CGGATAATGTAAAAGAATAAAGGCATCTGCTAATCCCTGAACTCCAATACCAATAGGTCT 77536 ||| ||| | | || || |||||||| || || || || || ||||| ||||| || || Sbjct 2981 CGGGTAACGCATGAGGATGAAGGCATCCGCCAAACCTTGGACGCCAATTCCAATCGGCCT 2922 Query 77537 ATGTCTCTTATTGGAAATTTTAGCTTCTGGAATAGGATAATAATTAATGTCTATAATTTT 77596 || | ||| ||||| ||| ||||| || | ||||| || ||||| || || | || Sbjct 2921 GTGGCGCTTGTTGGACTTTTCCGCTTCGGGCACTGGATAGTAGTTAATTTCGATGACCTT 2862 Query 77597 ATTGAGATTTCTAACAACTACTTTAACCACGTCCTTTAGTTTAAGAAAATCAAATCTTCC 77656 || | ||| | || | |||||| ||| | ||||| ||| ||||| | | Sbjct 2861 GTTCAAATTCTTGACGATTACTTTGGTCACAGACGCCAGTTTTTTAAAGTCAAAAGTCCG 2802 Query 77657 ATCTA---TAACAAACATGTTCAAAGCTATAGATGCTAGATTACAAACTGCTACCTCATT 77713 || | || ||||||| | || || || || ||||| || || |||||||||| Sbjct 2801 CTCCGGGGTGACGTACATGTTGAGCGCAATTGAGGCCAGATTGCACACCGCTACCTCATC 2742 Query 77714 AGCGTTGGCATATTGTATTATCTCGGTACATAGATTACTACATTTGATAGTGCCCAGATT 77773 | ||| || | || || || || || || || || | ||||| ||||||||||| Sbjct 2741 GTGGCTGGTGTACTCGATAATTTCTGTGCAGAGGTTGCTGGACTTGATGGTGCCCAGATT 2682 Query 77774 TTGTTGGTTGCTCTTTTTATTGCATGAGTCCTTATAAAGAATAAACGGAGTCCCGGTTTC 77833 |||||||||||||| | ||||| | ||| || || || || | || || || ||||| Sbjct 2681 CTGTTGGTTGCTCTTCCTGTTGCAGGCGTCTTTGTACAGCATGTATGGCGTGCCAGTTTC 2622 Query 77834 AATCTGTGATTCGATAATAGATTTCCAGACGACT-CT-AGCTTTTATCATAGATTTGTAT 77891 |||| || ||||||| | | || || ||| || ||| || | || ||| | Sbjct 2621 TGTCTGGGACTCGATAACGGCGTGCC--ACAACTGCTGAGCCTTCACCACGCGCTTGAAC 2564 Query 77892 CGCCTCTCTCTTTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCC 77951 || || | ||||| || || ||| ||| || || || ||||| |||||| Sbjct 2563 TTCCCCTGCTTCTCATAGGAGGTGTAGAGCTTTTCGAACTCCTCCCCCCAGCACTCATCC 2504 Query 77952 AATCCAGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTC 78011 | || ||||| || || || ||||||| |||||||| | | || |||| ||| Sbjct 2503 AGCCCTGGGCACTCGTTGGGACACATCAGAGACCAGTCCTCGTTGCTCTCCACTCTCTTC 2444 Query 78012 ATAAAGAGATCAGGTATCCATAGAGCAATA-AATAGATCTCGGGTTCTATGTTCTTCATT 78070 || || || || || ||||| || || || || || || | || ||| || || || || Sbjct 2443 ATGAACAGGTCGGGGATCCACAG-GCCGTAGAAAAGGTCCCTGGCTCTCTGCTCCTCCTT 2385 Query 78071 TCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATA 78130 ||| || ||||| || || || || || || | | || | ||||| || || || || Sbjct 2384 TCCGGTGTTCTTCTTTAGCTCCAGGAAGTCAAACACGTCGGCGTGCCAGGGCTCCAGGTA 2325 Query 78131 TATTGCCATAACTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCGGTGTTATT 78190 || || | |||| |||| || || || ||||| || | || | || ||||| || Sbjct 2324 CATGGCAAAGGCTCCTGGTCTCTTGTTGCCGCCCTGGTCGACGTAACGTGCCGTGTTGTT 2265 Query 78191 ATAAACTCTCAACATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGAAATATAACT 78250 |||||||||| ||| || | | ||||| || | || || || || | || || || Sbjct 2264 GTAAACTCTCAGCATGGGGACGACCCCGTTGGAGTTGCCGTTGGTGCCGGCGATGTAGCT 2205 Query 78251 TCCACTTGCGCGAATATTACTAATGGATATCCCTATTCCTCCTGCCATCTTAGATATTAG 78310 || ||| | || || || | | || ||||| || || || || || || Sbjct 2204 CCCCGTTGTTCTGATGCAGCTTATCGCCACACCGATTCCCCCGGCTGATTTGGAGATGAG 2145 Query 78311 AGCGCAACGTTTCAATGTATCGTAGATACCCTCTATACTGTCATCCATCATGTTAAGAAG 78370 ||||| | |||| || ||||| || || || || ||||| || ||||| || || Sbjct 2144 GGCGCATTGCTTCAGCGTGTCGTAAATGCCTTCGATGCTGTCGTCTTTCATGGCGAGCAG 2085 Query 78371 AAAACAGCTAGACATTTG----ATGATGAACAGTTCCTGCATTAAATAATGTCGGAGATG 78426 || ||||| |||| || || || |||||||| || || | || || || | Sbjct 2084 GAAGCAGCTGGACAGCTGTGGCCTGTTG----GTTCCTGCGTTGAAGAGCGTGGGGGAGG 2029 Query 78427 CATGCGTAAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAGCTGATTCTATGTCCC 78486 | || || ||||| || || || || || ||||| || ||||| |||| || |||||| Sbjct 2028 CGTGGGTGAACCACTTCTCTGACAGCAGGTTGTACGTCTCAATGGCTGCGTCGATGTCCA 1969 Query 78487 ATTGATGAATTCCTACCGCTACACGCATCAACATATGCTGAGGTCTTTCAACCGTCTTAT 78546 | || || || || | || | ||| | ||| ||||| |||| || || || Sbjct 1968 TCTTGTGGATCCCGACGGACACTCTCATGAGCATGTGCTGCGGTCGCTCGGCCACTTTGC 1909 Query 78547 TATTTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAA 78606 || || ||||||| ||| || |||| ||| || || || || ||||||| || | Sbjct 1908 CGTTGATCTTCAACAGGTAGGACCGCTCCAGAGTCTTGAAGCCGAAGAAGTTGTAGGAGA 1849 Query 78607 AGTCTCTCTCGTAAATAATAACAGAATTTAGTTTATCTTTGTATTTGGTAACAATATCCA 78666 | ||||| ||| |||| || | || || || ||||||| | | ||| || || | Sbjct 1848 AATCTCTGTCGAAAATGATGGCCGAGTTGAGGCGGTCTTTGTTCTCGAGAACGATGTCGA 1789 Query 78667 TGACAGTAGTT-GAAATAATAGGAGATCGTACACCATTTTTAGGATTAACATAGTTAAAT 78725 | | || || || || || || | ||||| || || | ||||| | Sbjct 1788 -GCGTCTCCTTGGAGATCATGGGCGAGTGGCGGTCATTTAAGGGGTTGATGTAGTTGTAC 1730 Query 78726 AAATCTTCCATTACATCACTAAATAGtttttttGTTTCCTTGTGTAGATTAGATACAGCT 78785 | || ||||| || || || || | || || || || ||||| || || || || || Sbjct 1729 AGGTCCTCCATCACGTCGCTGAACACCTTCTTCGTCTCTTTGTGCAGGTTTGAGACGGCG 1670 Query 78786 ATTCTTGCAGCTAGAATAGCATAATCAGGATGTTGTGTAGTACAAGTGGCTGCTATTTCT 78845 || | |||||| || || || || || || || | || || |||||| | || || Sbjct 1669 ATCCGTGCAGCGAGTATGGCGTAGTCGGGGTGCTTAGTTGTGAGAGTGGCGGTGATCTCA 1610 Query 78846 GCCGCTAAAATATCTAACTCTATAGTTGTGACCCCATTATATAGTCCTTGAATAACTTTC 78905 || || | | || | ||| | || ||||| || | || | || || || || ||| Sbjct 1609 GCAGCCAGCGTGTCGAGCTCCACGGTGGTGACGCCGCTGTACAAACCCTGGATCACCTTC 1550 Query 78906 ATGGCGATTTTGACAGGATCTACAAACTCAGTGTTCAATCCATAACATAATTTTCTAATA 78965 |||| ||| | | | ||||| || || |||| ||||| ||| || || | || || Sbjct 1549 ATGGTGATCTGGGCCGGATCCACGAAGTCAGAGTTCAGTCCGTAGCACAGCTTCTGGATG 1490 Query 78966 CGAGATGTGATTTTATCAAATATAACATTCTCCTTGCATCCAT 79008 ||| | |||||||| || || || || ||| | || ||||| Sbjct 1489 CGACAGGTGATTTTGTCGAACATGACGCGCTCTTGGCGTCCAT 1447 Score = 93.3 bits (102), Expect = 6e-14 Identities = 123/171 (72%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 76849 TCCATCCGTAGAAATGCATGCTTGTCAGTTTGGAATAACTAGGATCGGCTATATGAATAT 76908 |||| ||| |||| |||||||| ||||||||| || | || || || || || || | Sbjct 4203 TCCAGCCGAAGAAGTGCATGCTGGTCAGTTTGCCGTAGTTGGGCTCTGCGATGTGGATGT 4144 Query 76909 TCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCT 76968 ||| ||||| || || |||||| | || || | || || ||||| || | || |||| Sbjct 4143 TCAGGGACTGGCTCTGGTCGATGTAGGCGCCGCGGTCGGCTGCCATCTTCAGTATAGTCT 4084 Query 76969 TTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAA 77019 | || | |||||||||| ||||| | | || || | ||||||||||| Sbjct 4083 TCTGGGAGATTTCCCAAACGGTTTTATACAGCTGCTTCAGATCATCTGGAA 4033 >seq8304 Length=64587 Score = 98.7 bits (108), Expect = 1e-15 Identities = 93/119 (78%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 77733 ATCTCGGTACATAGATTACTACATTTGATAGTGCCCAGATTTTGTTGGTTGCTCTTTTTA 77792 ||||| || || ||||| || ||||||| ||||||||||| || ||||||||||| | Sbjct 6210 ATCTCCGTGCACAGATTGCTGGATTTGATGGTGCCCAGATTCTGCTGGTTGCTCTTCCTG 6269 Query 77793 TTGCATGAGTCCTTATAAAGAATAAACGGAGTCCCGGTTTCAATCTGTGATTCGATAAT 77851 ||||| | |||||| || || || | || || |||||||| |||| |||||||| || Sbjct 6270 TTGCAGGCGTCCTTGTAGAGCATGTATGGCGTGCCGGTTTCGGTCTGCGATTCGATGAT 6328 Score = 98.7 bits (108), Expect = 1e-15 Identities = 123/169 (73%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 78739 CATCACTAAATAGtttttttGTTTCCTTGTGTAGATTAGATACAGCTATTCTTGCAGCTA 78798 || |||| || | ||| || || || |||||||||||||| ||||| || | |||||| | Sbjct 9290 CACCACTGAACACTTTCTTGGTCTCTTTGTGTAGATTAGACACAGCAATCCGTGCAGCCA 9349 Query 78799 GAATAGCATAATCAGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCCGCTAAAATAT 78858 | | |||||| ||||| |||| || || |||||||| | ||||| || | | | | Sbjct 9350 GGAGAGCATAGTCAGGGTGTTTGGTGGTGAGGGTGGCTGCGGTCTCTGCTGCCAGAGTGT 9409 Query 78859 CTAACTCTATAGTTGTGACCCCATTATATAGTCCTTGAATAACTTTCAT 78907 | | ||| | || ||||||||| | || || || || || || ||||| Sbjct 9410 CCAGCTCCACGGTGGTGACCCCACTGTACAGACCCTGGATCACCTTCAT 9458 >seq25594 Length=9440 Score = 84.2 bits (92), Expect = 3e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 48165 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTG 48224 ||||| | |||||| | ||||| || | || || || ||||||||||| | || ||| Sbjct 4740 TCATCCCGACTAATCAGCTCGTTGGAGTAGGTAAGGCCAGGCATTAGTCCTCTCTTCTTG 4799 Query 48225 AGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGC 48283 |||||||| || || ||||| || || || ||||| ||||| || || || ||||| || Sbjct 4800 AGCCAAAAGATGGCAGCGAATGAGCCGGAGAAGAAGATGCCCTCCACTGCTGCAAAAGC 4858 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694076542747840