Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20rubrivinctus_20[genbank_20GCA_5F000475215.1_202013-10-22] 68,206 sequences; 756,296,653 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq34972 365 6e-96 seq25594 98.7 1e-15 seq8304 84.2 3e-11 >seq34972 Length=31405 Score = 365 bits (404), Expect = 6e-96 Identities = 1261/1950 (65%), Gaps = 35/1950 (2%) Strand=Plus/Minus Query 75656 TTCTTGATCTCATCATTCCACAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTA 75715 ||||| ||||| || |||||| |||||| || | || | || |||||||| || Sbjct 3397 TTCTTCATCTCCTCGCTCCACAGCCCTCTCTCCGTCAGGTCTTTGAGCAGATGAGGGTTG 3338 Query 75716 ACAATTTGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCC 75775 || || ||||| ||||| || | || || || ||||| || || ||||| || | ||| Sbjct 3337 ACGATCTGAAACTCTCCGGAGAGGACCCTGCGGGTGTAGATGTTGCTGGTGTAGGCTTCG 3278 Query 75776 ACAGATTCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAAT 75835 | || || ||||| |||| || || || || || || || ||||| || |||| || Sbjct 3277 ATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGCATCGGGGCCAGCAGC 3218 Query 75836 AAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGA 75895 | || || || | || || | ||| || || || || ||||| ||| || Sbjct 3217 AGGCTGTTCCTCACGCCGTGGATGGCGATCTTCTCCTTCAGCAGCTTCCAGTCCAGCAGT 3158 Query 75896 TCTGATGG-TACAACATCCCAGAGATCGTATTGTAGAATTCCGTTGCTAGCATATGATCC 75954 || | || | | | ||||| | ||||| || || || || ||||| | || || Sbjct 3157 TCGGTGGGCTTCTTC-TCCCACATGTCGTACTGCAGGATGCCCTTGCTGACGGGAGAGCC 3099 Query 75955 ATTATATGTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTCGCAACTCGCCTCTAACGCACC 76014 || || ||||| | ||| || | || || ||||| |||||||| | || | Sbjct 3098 TGCGTACGTCTCGTAGGGGCCGAGCTCGGCGGCCAGCTCGCAGCTCGCCTCCAGGGCGGC 3039 Query 76015 GTAATAAATTGTTTCGAAAATCTTCTTATTAAGATCTTGCGCTTCAAGACTATCAAAAGG 76074 || || || | ||||| || | |||| || || || || || || || || Sbjct 3038 GTGGTAGATGGCCTCGAAGATTTGAATATTCAGCAGCTGAGCCTCTTTGCTTTCGAACGG 2979 Query 76075 ATAATGTAAAAGAATAAATGCATCTGCTAGTCCCTGAACTCCAATACCAATAGGTCTATG 76134 ||| | | || || || ||||| || | || || || ||||| ||||| || || || Sbjct 2978 GTAACGCATGAGGATGAAGGCATCCGCCAAACCTTGGACGCCAATTCCAATCGGCCTGTG 2919 Query 76135 TCTCTTATTGGAAATTTCAGCTTCTGGAATAGGGTAATAATTAATATCTATAATTTTATT 76194 | ||| ||||| |||| ||||| || | || || || ||||| || || | || || Sbjct 2918 GCGCTTGTTGGACTTTTCCGCTTCGGGCACTGGATAGTAGTTAATTTCGATGACCTTGTT 2859 Query 76195 GAGATTTCTGACAACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAATTTTCCATC 76254 | ||| |||| | |||||| ||| | ||||| ||| ||||| | | || Sbjct 2858 CAAATTCTTGACGATTACTTTGGTCACAGACGCCAGTTTTTTAAAGTCAAAAGTCCGCTC 2799 Query 76255 TA---TCACAAACATATTAAGAGCTATAGATGCTAGATTACAAACGGCTACCTCAT--TA 76309 | || |||| || || || || || || ||||| || || |||||||||| | Sbjct 2798 CGGGGTGACGTACATGTTGAGCGCAATTGAGGCCAGATTGCACACCGCTACCTCATCGTG 2739 Query 76310 GCATTGGCATATTGTATTATCTCCGTGCATAGATTACTACACTTGATAGTTCCAAGATTT 76369 || ||| || | || || || ||||| || || || ||||||| || || ||||| Sbjct 2738 GC--TGGTGTACTCGATAATTTCTGTGCAGAGGTTGCTGGACTTGATGGTGCCCAGATTC 2681 Query 76370 TGTTGGTTGCTCTTTTTGTTACATGAGTCCTTATAAAGAACAAACGGAGTTCCAGTTTCA 76429 |||||||||||||| |||| || | ||| || || || | | || || |||||||| Sbjct 2680 TGTTGGTTGCTCTTCCTGTTGCAGGCGTCTTTGTACAGCATGTATGGCGTGCCAGTTTCT 2621 Query 76430 ATCTGTGATTCGATAATAGATTTCCAGACGACT-CT-AGCTTTTATTATAGATTTGTATC 76487 |||| || ||||||| | | || || ||| || ||| || | | ||| | Sbjct 2620 GTCTGGGACTCGATAACGGCGTGCC--ACAACTGCTGAGCCTTCACCACGCGCTTGAA-- 2565 Query 76488 GCTTCTC--TCTT-TCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCAT 76544 |||| | ||| ||||| || || | | ||| || || || ||||| |||| Sbjct 2564 -CTTCCCCTGCTTCTCATAGGAGGTGTAGAGCTTTTCGAACTCCTCCCCCCAGCACTCAT 2506 Query 76545 CCAAACCAGGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTT 76604 ||| || || || || || |||||||||| ||||| || | | || || | | Sbjct 2505 CCAGCCCTGGGCACTCGTTGGGACACATCAGAGACCAGTCCTCGTTGCTCTCCACTCTCT 2446 Query 76605 TCATAAAGAGATCAGGTATCCATAGAGCAATA-AATAGATCTCGGGTTCTACGTTCTTCA 76663 |||| || || || || ||||| || || || || || || | || ||| | || || Sbjct 2445 TCATGAACAGGTCGGGGATCCACAG-GCCGTAGAAAAGGTCCCTGGCTCTCTGCTCCTCC 2387 Query 76664 TTTCCTGTATTCTTTTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGTTCTAGA 76723 ||||| || ||||| || || || ||||| || | | || | ||||| || || || Sbjct 2386 TTTCCGGTGTTCTTCTTTAGCTCCAGGAAGTCAAACACGTCGGCGTGCCAGGGCTCCAGG 2327 Query 76724 TATATCGCCATAACACCCGGTCGTTTATTACCTCCCTGATCTATATATCTGGCAGTGTTA 76783 || || || | | || |||| || || || ||||| || | || | || ||||| Sbjct 2326 TACATGGCAAAGGCTCCTGGTCTCTTGTTGCCGCCCTGGTCGACGTAACGTGCCGTGTTG 2267 Query 76784 TTATAAACTCTCAACATTGGAATAATGCCGTTAGATGTACCATTTGTTCCAGAAATATAA 76843 || |||||||||| ||| || | | ||||| || | || || || || | || || Sbjct 2266 TTGTAAACTCTCAGCATGGGGACGACCCCGTTGGAGTTGCCGTTGGTGCCGGCGATGTAG 2207 Query 76844 CTTCCACATGCACGAATATTACTAATAGATAGGCCTATTCCTCCTGCCATTTTAGAGATT 76903 || || || | || || || | | || ||||| || || ||| ||||| Sbjct 2206 CTCCCCGTTGTTCTGATGCAGCTTATCGCCACACCGATTCCCCCGGCTGATTTGGAGATG 2147 Query 76904 AGAGCACAGCGTTTCAATGTGTCATAGATGCCCTCTATACTATCATCCATCATGTTAAGA 76963 || || || | |||| ||||| || ||||| || || || || || ||||| || Sbjct 2146 AGGGCGCATTGCTTCAGCGTGTCGTAAATGCCTTCGATGCTGTCGTCTTTCATGGCGAGC 2087 Query 76964 AGAAAACAGCTAGACATTTG----ATGATGAACAGTTCCTGCATTAAACAATGTAGGAGA 77019 || || ||||| |||| || || || |||||||| || || | || || || Sbjct 2086 AGGAAGCAGCTGGACAGCTGTGGCCTGTTG----GTTCCTGCGTTGAAGAGCGTGGGGGA 2031 Query 77020 TGCATGAGTGAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAACTGCTTCTATATC 77079 || || |||||||| || || || || || ||||| || ||||| |||| || || || Sbjct 2030 GGCGTGGGTGAACCACTTCTCTGACAGCAGGTTGTACGTCTCAATGGCTGCGTCGATGTC 1971 Query 77080 CCATTGATGAATTCCTACAGCGACACGCATCAACATATGCTGAGGTCGTTCTACAGTCTT 77139 | | || || || || | || | ||| | ||| ||||| ||||| || | || Sbjct 1970 CATCTTGTGGATCCCGACGGACACTCTCATGAGCATGTGCTGCGGTCGCTCGGCCACTTT 1911 Query 77140 ATTATTTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGA 77199 || || ||||||| ||| || |||| ||| || || || || ||||||| || Sbjct 1910 GCCGTTGATCTTCAACAGGTAGGACCGCTCCAGAGTCTTGAAGCCGAAGAAGTTGTAGGA 1851 Query 77200 AAAGTCTCTTTCGTAAATAATAACCGAATTTAGTTTGTCCTTATATTTGGTAACAATATC 77259 || ||||| ||| |||| || |||| || || ||| || | | | ||| || || Sbjct 1850 GAAATCTCTGTCGAAAATGATGGCCGAGTTGAGGCGGTCTTTGTTCTCGAGAACGATGTC 1791 Query 77260 CATGACAGT---GGTAGAAATAATTGGAGATCGTATTCCATTTTTAGGATTAACATAGTT 77316 || || | || || || || || | ||||| || || | ||||| Sbjct 1790 ---GAGCGTCTCCTTGGAGATCATGGGCGAGTGGCGGTCATTTAAGGGGTTGATGTAGTT 1734 Query 77317 AAATAAGTCTTCCATTACGTCGCTAAATAGtttttttGTTTCCTTGTGTAGATTCGATAC 77376 | | ||| ||||| |||||||| || | || || || || ||||| || || || || Sbjct 1733 GTACAGGTCCTCCATCACGTCGCTGAACACCTTCTTCGTCTCTTTGTGCAGGTTTGAGAC 1674 Query 77377 GGCTATTCTAGCAGCTAGAATTGCATAGTCAGGATGTTGTGTAGTGCAGGTGGCTGCTAT 77436 ||| || | ||||| || || || ||||| || || | || ||| ||||| | || Sbjct 1673 GGCGATCCGTGCAGCGAGTATGGCGTAGTCGGGGTGCTTAGTTGTGAGAGTGGCGGTGAT 1614 Query 77437 TTCTGCCGCTAAAGTATCTAATTCTATAGTAGTAACTCCGTTATATAGCCCTTGAATAAC 77496 || || || | || || | || | || || || ||| | || | || || || || Sbjct 1613 CTCAGCAGCCAGCGTGTCGAGCTCCACGGTGGTGACGCCGCTGTACAAACCCTGGATCAC 1554 Query 77497 TTTCATGGCTATTTTGATAGGATCTACAAACTCGGTGTTCAAACCATAACATAATTTTCT 77556 ||||||| || | | ||||| || || || | ||||| || || || | || Sbjct 1553 CTTCATGGTGATCTGGGCCGGATCCACGAAGTCAGAGTTCAGTCCGTAGCACAGCTTCTG 1494 Query 77557 AATACGAGATGTGATTTTATCAAACATGAC 77586 || ||| | |||||||| || |||||||| Sbjct 1493 GATGCGACAGGTGATTTTGTCGAACATGAC 1464 Score = 87.8 bits (96), Expect = 3e-12 Identities = 122/171 (71%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 75444 TCCATCCGTAGAAATGCATGCTTGTTAGTTTGGAATAACTCGGATCGGCTATATGAATAT 75503 |||| ||| |||| |||||||| || |||||| || | || || || || || || | Sbjct 4203 TCCAGCCGAAGAAGTGCATGCTGGTCAGTTTGCCGTAGTTGGGCTCTGCGATGTGGATGT 4144 Query 75504 TCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCT 75563 ||| ||||| || || |||||| | || || | || || ||||| || | || |||| Sbjct 4143 TCAGGGACTGGCTCTGGTCGATGTAGGCGCCGCGGTCGGCTGCCATCTTCAGTATAGTCT 4084 Query 75564 TTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAA 75614 | || | |||||||||| ||||| | | || || | ||||||||||| Sbjct 4083 TCTGGGAGATTTCCCAAACGGTTTTATACAGCTGCTTCAGATCATCTGGAA 4033 >seq25594 Length=9440 Score = 98.7 bits (108), Expect = 1e-15 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 46654 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTG 46713 ||||| | |||||| | ||||| || | || || |||||||||||||| | ||| ||| Sbjct 4740 TCATCCCGACTAATCAGCTCGTTGGAGTAGGTAAGGCCAGGCATTAGTCCTCTCTTCTTG 4799 Query 46714 AGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCG 46773 |||||||| || || ||||| || || || ||||| ||||| || || || || || || Sbjct 4800 AGCCAAAAGATGGCAGCGAATGAGCCGGAGAAGAAGATGCCCTCCACTGCTGCAAAAGCC 4859 Query 46774 ACAAGTCTCTCTCC 46787 |||| || ||| || Sbjct 4860 ACAATTCGCTCCCC 4873 >seq8304 Length=64587 Score = 84.2 bits (92), Expect = 3e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 76328 ATCTCCGTGCATAGATTACTACACTTGATAGTTCCAAGATTTTGTTGGTTGCTCTTTTTG 76387 ||||||||||| ||||| || | ||||| || || ||||| || ||||||||||| || Sbjct 6210 ATCTCCGTGCACAGATTGCTGGATTTGATGGTGCCCAGATTCTGCTGGTTGCTCTTCCTG 6269 Query 76388 TTACATGAGTCCTTATAAAGAACAAACGGAGTTCCAGTTTCAATCTGTGATTCGATAAT 76446 || || | |||||| || || | | || || || ||||| |||| |||||||| || Sbjct 6270 TTGCAGGCGTCCTTGTAGAGCATGTATGGCGTGCCGGTTTCGGTCTGCGATTCGATGAT 6328 Score = 84.2 bits (92), Expect = 3e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 76994 GTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTG 77053 || || ||||| |||| ||||| || || || ||||||||||| || || || | ||| Sbjct 7395 GTGCCAGCATTGAACAGAGTAGGTGAGGCGTGGGTGAACCATTTCTCTGACAGCAAGTTG 7454 Query 77054 TATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAAC 77113 || || ||||| |||| || || || | || |||||| || ||||| || | ||| | | Sbjct 7455 TAGGTCTCAATGGCTGCATCAATGTCTCTTTCATGAATCCCGACAGCCACTCTCATTAGC 7514 Query 77114 ATATGCTGAGG 77124 || ||||| || Sbjct 7515 ATGTGCTGGGG 7525 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712326569953920