Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20rubrivinctus_20[genbank_20GCA_5F000475215.1_202013-10-22] 68,206 sequences; 756,296,653 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq20209 161 1e-34 seq7377 145 1e-29 >seq20209 Length=49103 Score = 161 bits (178), Expect = 1e-34 Identities = 175/232 (75%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 8309 CCCTTGACGTTGCTACAGACTAGAGACTGAATAGTTGCGCTCTTGACGATCCCGAACCCC 8368 |||| ||||| | ||||| || ||| | | ||| | |||||||| |||| ||| Sbjct 38955 CCCTGCACGTTATTGCAGACGAGCCTCTGCAGGGAGGCGGTGTTGACGATGTCGAAGCCC 38896 Query 8369 ACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGTTCGCCATG 8428 ||| || ||||| ||||| |||||||||||| |||| ||||||||| ||| |||| Sbjct 38895 ACGCTGCCTCCGAACGTGCTCGGCTTCCAGTACTCCGGCGAGCAGATGGGGTTTCCCATT 38836 Query 8429 AGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGATGGCGTTG 8488 | ||| ||||||||| | || ||||||| ||| | ||| |||| || |||||||||||| Sbjct 38835 AAGCCCTTGAGGGAGTAAGGGGCCCCCATCTCCACCATGGTCTCCCCAAAGATGGCGTTG 38776 Query 8489 GGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACGT 8540 | |||||||| ||||||| | || | ||| || ||||| || ||||||| Sbjct 38775 GTCCGGGGCTTCTCCACCAGCAGACCCGGGTAGAGTTCCACGGCGTCGACGT 38724 Score = 102 bits (112), Expect = 1e-16 Identities = 203/296 (69%), Gaps = 6/296 (2%) Strand=Plus/Minus Query 8944 CTTACTCGGCCGGCTATTTGTTTCGTGAACGATTCTACTAGCTGGGTAATGCCGTGAGTC 9003 ||||| || || || || || || || ||||| || || || | | |||||||| | Sbjct 37794 CTTACCCGTCCAGCGATCTGATTGGTAAACGACTCCACGAGGTTGCCGATGCCGTGCTCC 37735 Query 9004 ATGAGTATGGAATTGTTGTAGACGAA--GTTAACGTAGTCATACTTTGTTTTATCAATCT 9061 | | | ||| |||||| |||| || ||| | |||| |||| | | | ||||| | Sbjct 37734 GTCACCACGGAGTTGTTGAAGACAAACTGTTTA--TAGTTGTACTCTTTCTCCTCAATGT 37677 Query 9062 CAAATGCATCCGGCATGAGAGAATGCCAGTGATACAACATGTTAAACTCGGAAAATATAC 9121 || | ||| ||||| |||| |||||||| |||| |||| |||||||| | || | Sbjct 37676 GGAAAGTATCGGGCATCAGAGGGTGCCAGTGGTACAGGGTGTTGAACTCGGACGAGATGC 37617 Query 9122 GATTTTGGTACTGGAA-CGAAGTACCAAAGAGCAGTTCGGGCTTAAACAGCAGCTGAAAA 9180 | || ||||||||||| || | || ||||| ||||| | |||| |||| || Sbjct 37616 GGTTCTGGTACTGGAAGCGCTG-GTTGAACAGCAGCTCGGGGTCAAACTTGAGCTTGAAG 37558 Query 9181 TGGTAGCCGCTGAGCTGCTGAACGTATTGCGTCACGATAATGTTGATGGTTTCCCC 9236 | |||||||| || ||||| ||||| | | | | ||| |||||||| || || Sbjct 37557 TTATAGCCGCTCAGGTGCTGCACGTAGTCCTCGATCACAATCTTGATGGTCTCTCC 37502 Score = 100 bits (110), Expect = 4e-16 Identities = 156/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 9244 ATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGA 9303 ||||| || | |||||||| || |||||| ||| || || || | |||| Sbjct 36935 ATGAGCCGTGATGTCTGGAAGAGCCTCTCGTCGTCCCAGTCCGGGTGGACCGCCTTCAAC 36876 Query 9304 ACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGT 9363 || || ||||||| ||||||||| | |||||||| |||||||||||||| || || || Sbjct 36875 ACGTCACACACCCGGTTGTGTTCTCGTAGCCAGATGGTGGCGTACATCATCAGGCCGGGG 36816 Query 9364 ACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACTTCGGGAGGA 9423 |||||||| || ||||| || || ||||| | || ||||| || | ||||| Sbjct 36815 ACCAGGCCGAACGCCTCGTGGCCCACAGCGAAGCGGTGAGGGTCGGGAACGTGAGGAGGG 36756 Query 9424 TAGATCATGTGCACCTGGACGTCTTTGACCGAGGGGGGATACA 9466 ||| ||||| || || || || || | |||||||||| Sbjct 36755 TAGTGCATGTCAACGCCCACCTCCTTTACTGTTGGGGGATACA 36713 >seq7377 Length=53025 Score = 145 bits (160), Expect = 1e-29 Identities = 181/248 (73%), Gaps = 0/248 (0%) Strand=Plus/Plus Query 8303 GGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAGTTGCGCTCTTGACGATCCCG 8362 ||||||| |||| |||| || || || || | ||| || | |||||||| | Sbjct 18940 GGACACCACTTGGTGTTGAGGCACACCAGCTTCTTCAAAGTGGCAGTTTTGACGATATTG 18999 Query 8363 AACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGTTC 8422 || ||| ||||| || ||||||||||||||||||||| | |||||||||||| ||| Sbjct 19000 AAGCCCGTCTCTCCCCCAAAGGTGCTGGGCTTCCAGTACTCAGGGGAGCAGATGGGGTTT 19059 Query 8423 GCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGATG 8482 |||| |||||||| |||||||| ||||| |||| ||| | || |||||||| ||||| Sbjct 19060 GCCAGCAGGCCTTTCAGGGAGAAGGGAGCACCCATCTCCACCATACTCTCACCAAAGATA 19119 Query 8483 GCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACGTCT 8542 | | || || | ||||| | || | |||| ||| | ||||| ||| || | ||| Sbjct 19120 CCAGTAGGGCGTGCTTTTTCTAGTAAAAGGCCGGGGTAAAACTCCAAAGCATCTATGTCA 19179 Query 8543 CCGTAAAG 8550 ||||| || Sbjct 19180 CCGTAGAG 19187 Score = 143 bits (158), Expect = 4e-29 Identities = 193/269 (72%), Gaps = 0/269 (0%) Strand=Plus/Plus Query 8282 GGAACTCGGAACGCGGCCAACGGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATA 8341 ||||| |||| || | | ||||||| |||| |||| || || || || | | Sbjct 32927 GGAACATGGAAGTCGACGTATGGACACCACTTGGTGTTGAGGCACACCAGTTTCTTCAAA 32986 Query 8342 GTTGCGCTCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTAC 8401 || | | |||||||| ||| ||| ||||| || ||||||||||||||||||||| Sbjct 32987 GTGGAAGTTTTGACGATATTGAAGCCCGTCTCTCCCCCAAAGGTGCTGGGCTTCCAGTAC 33046 Query 8402 CCCGGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCG 8461 | |||||||||||| ||| ||| ||||| || |||||||| ||||| |||| ||| Sbjct 33047 TCAGGGGAGCAGATGGGGTTTCCCAGCAGGCCCTTCAGGGAGAAGGGAGCACCCATCTCC 33106 Query 8462 AGAATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTAC 8521 | || |||||||| || | ||||||||| | || |||| || || |||| ||| Sbjct 33107 ACCATACTCTCACCAAACAGTCTGTTGGGACGTGTTTTCTCCAGCAGGATGCCGGGGTAG 33166 Query 8522 AGCTCCACAGCCTCGACGTCTCCGTAAAG 8550 | ||||| ||| || | ||| ||||| || Sbjct 33167 AACTCCAAAGCATCTATGTCACCGTAGAG 33195 Score = 116 bits (128), Expect = 5e-21 Identities = 171/242 (71%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 9232 TCCCCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGT 9291 || || || |||||||||| | ||||||||| || ||||| || ||| |||||| Sbjct 37101 TCACCAATGATGATGAGTCTGGCGGTCTGGAAGAGCTGCTCATCGTCCCAGGTGGGATGT 37160 Query 9292 TCTTGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATC 9351 ||| ||||| | || || || ||||| || ||||| | ||| || ||||||||||| Sbjct 37161 TCTGCCTTCAGGATGTCACAGACTCTGTTATGCTCCCTCAACCATATGGTGGCGTACATG 37220 Query 9352 ATGAGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGC 9411 |||| || || | |||||||| |||| ||||||| ||||||||| | | | || Sbjct 37221 GTGAGGCCCGGCAGGAGGCCAAATACCTCCTGACCGATGGCCAGACGCTTCTCTGGAGGG 37280 Query 9412 ACTTCGGGAGGATAGATCATGTGCACCTGGACGTCTTTGACCGAGGGGGGATACATTTCA 9471 | | |||||| | ||||||||| |||| || || | || || ||||| ||| Sbjct 37281 AAGTTTTCAGGATAAACCATGTGCACAGGGACTTCAGCTACTGTAGGAGGGTACATCTCA 37340 Query 9472 CC 9473 || Sbjct 37341 CC 37342 Score = 96.9 bits (106), Expect = 5e-15 Identities = 122/168 (73%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 9232 TCCCCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGT 9291 || || || |||||||||| ||||||||||| || ||||| | ||| |||||| Sbjct 20857 TCACCAATGATGATGAGTCTGGTGGTCTGGAAGAGCTGCTCATTGTCCCAGGTGGGATGT 20916 Query 9292 TCTTGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATC 9351 ||| ||||| | || || || ||||| || ||||| | ||| || |||| ||||| Sbjct 20917 TCTGCCTTCAGGATGTCACAGACTCTGTTATGCTCCCTCAACCATATGGTGGAATACATG 20976 Query 9352 ATGAGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGC 9399 |||| || || | |||||||| ||| ||||||| ||||||||| Sbjct 20977 GTGAGGCCCGGCAGGAGGCCAAATAACTCATGACCGATGGCCAGACGC 21024 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716265608762240