Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20rubrivinctus_20[genbank_20GCA_5F000475215.1_202013-10-22] 68,206 sequences; 756,296,653 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq15835 149 2e-30 seq27301 102 2e-16 >seq15835 Length=21870 Score = 149 bits (164), Expect = 2e-30 Identities = 159/208 (76%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCA--G 177981 || || ||||| || || ||||| || || || |||||||||||||| | ||| || | Sbjct 40 CAGATCTTCGTTAAGACCCTCACTGGCAAGACCATCACCCTCGAGGTCG--AGCCCAGCG 97 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 |||| || |||||||| ||| ||||| |||||||||||||| || || || || |||| Sbjct 98 ACACTATTGAGAACGTGAAAGCCAAGATCCAGGACAAAGAAGGCATTCCCCCAGATCAGC 157 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| ||||| || ||||| |||||||| | || || |||| || ||| Sbjct 158 AGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGTCGCACCCTCTCCGACTACAACA 217 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 ||||||| || || || || |||||||| Sbjct 218 TCCAAAAGGAGTCCACCCTCCATCTTGT 245 >seq27301 Length=2015 Score = 102 bits (112), Expect = 2e-16 Identities = 107/139 (77%), Gaps = 4/139 (3%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || ||||| || || || ||||| || |||||||| |||||||| || ||| Sbjct 1879 CAGATCTTTGTGAAGACCCTGACCGGAAAGACCATCACCCTGGAGGTGGA--GCCCAGTG 1936 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 || |||| || || ||||| ||||| ||||||||||| || |||||||| ||||||| Sbjct 1937 ACTCCATTGAAAATGTCAAGGCCAAGATCCAGGACAAAGAGGGCATCCCTCCAGACCAGC 1996 Query 178042 AACGACTTATCTTCGCCGG 178060 | || || ||||| || || Sbjct 1997 AGCGTCTGATCTTTGCTGG 2015 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1202679272093964