Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20rubrivinctus_20[genbank_20GCA_5F000475215.1_202013-10-22] 68,206 sequences; 756,296,653 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq15835 150 2e-31 seq33424 141 9e-29 seq27301 136 4e-27 seq12594 120 3e-22 >seq15835 Length=21870 Score = 150 bits (166), Expect = 2e-31 Identities = 170/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 ||||| | ||||| | ||| ||||| || ||| ||||||||| ||||| ||||||||| Sbjct 6922 CCGCCCCTCAGACGCAGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 6863 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| | || || ||||||||||| || || ||||| | ||| || || | |||| Sbjct 6862 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGGGGA 6803 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACC 41815 | || ||||||||| ||| || ||||| | | |||||||| | ||| ||| Sbjct 6802 ATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGCTGGGCTCGACC 6743 Query 41816 TCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 |||| || || || || || || || ||||| ||||| ||||||||| Sbjct 6742 TCCAGGGTGATGGTCTTGCCAGTGAGGGTCTTAACGAAGATCTGCATG 6695 Score = 141 bits (156), Expect = 9e-29 Identities = 165/220 (75%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | ||| ||||| || ||| |||||| || ||||| ||||||||||||||||| Sbjct 254 AGACGCAGCACAAGATGGAGGGTGGACTCCTTTTGGATGTTGTAGTCGGAGAGGGTGCGA 195 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || |||||||||||||| || ||||| | ||| || || | ||||| || || Sbjct 194 CCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGATCTGGGGGAATGCCTTCT 135 Query 41765 TTGTCCATGATTTTTTGCTTCAACG-ACGACACAGTGTCGCTCGACTCCACCTCCACCGT 41823 |||||| || | || |||| ||| | | ||||||||| | ||| ||||| | || Sbjct 134 TTGTCC-TGGATCTTGGCTTTCACGTTCTCAATAGTGTCGCTGGGCTCGACCTCGAGGGT 76 Query 41824 TATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || || || || || || ||||| ||||| ||||||||| Sbjct 75 GATGGTCTTGCCAGTGAGGGTCTTAACGAAGATCTGCATG 36 Score = 138 bits (152), Expect = 1e-27 Identities = 163/221 (74%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | || ||||| || ||| ||||||||| ||||| ||||| ||||||||||| Sbjct 6229 AGACGCAGGACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGT 6170 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || ||||||||||| || || ||||| | ||| ||||| | ||||| || ||| Sbjct 6169 CCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCC 6110 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTT 41824 |||||| ||| || ||||| | | |||||||| | ||| ||||| | || Sbjct 6109 TTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGCTGGGCTCGACCTCAAGAGTG 6050 Query 41825 ATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 || || || || || || ||||| || || ||||||||||| Sbjct 6049 ATGGTCTTGCCAGTGAGGGTCTTCACAAAGATCTGCATGTT 6009 Score = 132 bits (146), Expect = 4e-26 Identities = 163/220 (74%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | || ||||| || || ||||||||| ||||| ||||||||||||||||| Sbjct 6685 AGACGCAGGACAAGATGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGG 6626 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || ||||||||||| || || ||||| | ||| || || | ||||| || ||| Sbjct 6625 CCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGGGGAATGCCTTCC 6566 Query 41765 TTGTCCATGATTTTTTGCTTCAACG-ACGACACAGTGTCGCTCGACTCCACCTCCACCGT 41823 |||||| || | || |||| ||| | | |||||||| | || ||||||| || Sbjct 6565 TTGTCC-TGGATCTTGGCTTTCACGTTCTCAATGGTGTCGCTGGGTTCAACCTCCAGGGT 6507 Query 41824 TATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || || || || || || ||||| ||||| ||||||||| Sbjct 6506 GATGGTCTTGCCAGTGAGGGTCTTAACGAAGATCTGCATG 6467 Score = 125 bits (138), Expect = 7e-24 Identities = 159/219 (73%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | || ||||| || || || ||||| ||||| ||||||||||||||||| Sbjct 6457 AGACGCAGGACAAGATGGAGGGTAGATTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGA 6398 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || ||||||||||| || || ||||| | ||| ||||| | ||||| || ||| Sbjct 6397 CCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCC 6338 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTT 41824 || ||| ||| || ||| | | | |||||||| | ||| ||||||| || Sbjct 6337 TTATCCTGGATCTTGGCCTTAACATTCTCAATGGTGTCGCTGGGCTCGACCTCCAGGGTG 6278 Query 41825 ATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || || || || || || ||||| ||||| ||||||||| Sbjct 6277 ATGGTCTTGCCAGTGAGGGTCTTAACGAAGATCTGCATG 6239 >seq33424 Length=445 Score = 141 bits (156), Expect = 9e-29 Identities = 165/220 (75%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | ||| ||||| || ||| ||||||||| ||||||||||||||||||||||| Sbjct 139 AGACGGAGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTATAGTCGGAGAGGGTGCGG 198 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 |||| || |||||||| || || || ||||| ||||| ||||| | || | || ||| Sbjct 199 CCGTCTTCCAGCTGCTTTCCAGCAAAGATCAGACGCTGCTGGTCTGGAGGGATGCCCTCT 258 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAG-TGTCGCTCGACTCCACCTCCACCGT 41823 |||| | || | || || | ||| || | |||| || | ||||||||||| || Sbjct 259 TTGT-CTTGGATCTTGGCCTTGACGTTTTCAATGCTGTCACTGGGCTCCACCTCCAGGGT 317 Query 41824 TATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || || || || ||||| ||||| || || ||||||||| Sbjct 318 GATGGTCTTTCCAGTCAGGGTCTTCACAAAGATCTGCATG 357 >seq27301 Length=2015 Score = 136 bits (150), Expect = 4e-27 Identities = 165/222 (74%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | ||| ||||| || ||| ||||||||| ||||| ||||||||||||||||| Sbjct 1865 AGACGGAGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGG 1806 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 |||| || |||||||| || || || ||||| ||||| ||||| | || | || ||| Sbjct 1805 CCGTCTTCCAGCTGCTTTCCAGCAAAGATCAGACGCTGCTGGTCTGGAGGGATGCCTTCC 1746 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGT 41823 || ||| || | || |||| || | | ||||| || | ||||||||||| || Sbjct 1745 TTATCC-TGGATCTTGGCTTTGACATTTTCAATGGTGTCACTGGGCTCCACCTCCAAGGT 1687 Query 41824 TATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 || || || || ||||| ||||| || || |||||||| || Sbjct 1686 GATGGTCTTCCCGGTCAGGGTCTTCACAAAGATCTGCATTTT 1645 >seq12594 Length=11963 Score = 120 bits (132), Expect = 3e-22 Identities = 142/190 (75%), Gaps = 2/190 (1%) Strand=Plus/Minus Query 41675 TTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATC 41734 ||||| ||||||||||||||||||||||| |||| || |||||||| || || || ||| Sbjct 631 TTCTGGATGTTATAGTCGGAGAGGGTGCGACCGTCTTCCAGCTGCTTTCCAGCAAAGATC 572 Query 41735 AGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC 41794 || ||||| ||||| | || | || ||||| ||| || | || || | ||| | Sbjct 571 AGACGCTGCTGGTCTGGAGGGATGCCTTCCTTATCC-TGGATCTTGGCCTTGACGTTTTC 513 Query 41795 ACAG-TGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAA 41853 | | |||| || | ||||||||||| || || || || || ||||| ||||| || || Sbjct 512 AATGCTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTTCCAGTCAGGGTCTTCACAAA 453 Query 41854 AATCTGCATG 41863 ||||||||| Sbjct 452 GATCTGCATG 443 Score = 116 bits (128), Expect = 3e-21 Identities = 143/193 (74%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 41672 TCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 41731 || ||||| ||||| ||||||||||||||||| |||| || |||||||| || || || Sbjct 221 TCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGACCGTCTTCCAGCTGCTTTCCAGCAAAG 162 Query 41732 ATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGAC 41791 ||||| ||||| ||||| | || | || |||||| ||| || | || || | ||| Sbjct 161 ATCAGACGCTGCTGGTCTGGAGGGATGCCCTCCTTATCC-TGGATCTTGGCCTTGACGTT 103 Query 41792 GAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTAC 41850 | | | ||| || | ||||||||||| || || || || || || || ||||| || Sbjct 102 TTCAATTGAGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTTCCAGTAAGGGTCTTCAC 43 Query 41851 GAAAATCTGCATG 41863 ||| ||||||||| Sbjct 42 GAAGATCTGCATG 30 Score = 116 bits (128), Expect = 3e-21 Identities = 148/201 (74%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | ||| ||||| || ||| ||||||||| ||||| ||||||||||||||||| Sbjct 433 AGACGGAGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGG 374 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 |||| || |||||||| || || || ||||| ||||| ||||| | || | || ||| Sbjct 373 CCGTCTTCCAGCTGCTTTCCAGCAAAGATCAGACGCTGCTGGTCTGGAGGGATGCCCTCT 314 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAG-TGTCGCTCGACTCCACCTCCACCGT 41823 |||| | || | || || | ||| || | |||| || | ||||||||||| || Sbjct 313 TTGT-CTTGGATCTTGGCCTTGACGTTTTCAATGCTGTCACTGGGCTCCACCTCCAGGGT 255 Query 41824 TATCGTTTTACCCGTCAGCGT 41844 || || || || ||||| || Sbjct 254 GATGGTCTTTCCAGTCAGGGT 234 Score = 98.7 bits (108), Expect = 9e-16 Identities = 95/122 (78%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | ||| ||||| || ||| ||||||||| ||||| ||||||||||||||||| Sbjct 755 AGACGGAGCACAAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGA 696 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || |||||||| || || || ||||| ||||| ||||| | || | || ||| Sbjct 695 CCATCTTCCAGCTGCTTTCCAGCAAAGATCAGACGCTGCTGGTCTGGAGGGATGCCTTCC 636 Query 41765 TT 41766 || Sbjct 635 TT 634 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 461909851167200