Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20steindachneri_20[genbank_20GCA_5F001910785.1_202016-12- 20] 279,232 sequences; 648,011,071 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq95031 143 2e-29 seq270369 84.2 2e-11 >seq95031 Length=3790 Score = 143 bits (158), Expect = 2e-29 Identities = 493/757 (65%), Gaps = 24/757 (3%) Strand=Plus/Minus Query 133207 CTTTGACGAGATACTGGTTGACCACTTGAAACTCGCCGGCGAGAACGCGTCTGAGATATA 133266 |||||| |||| ||||||| | |||||||| |||| ||| || | | | || | Sbjct 2612 CTTTGAGCAGATGAGGGTTGACGATCTGAAACTCTCCGGAGAGGACCCTGCGGGTGTAGA 2553 Query 133267 CATTCGACGTGAACGGTTCGAAAGATTCGTTGTTGCCGAGTATCTGCGCCGTCGTCGCCG 133326 || ||| | | ||||| || ||||||||||| || ||||| || || | |||| Sbjct 2552 TGTTGCTGGTGTAGGCTTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCG 2493 Query 133327 TGGGCATGTACGCCACCAACAAAGAGTTTCTTACGCCGTACTTGTTTATGTTGCACTGCA 133386 ||||||| |||| || || ||| || ||||||| || || || || || Sbjct 2492 TGGGCATCGGGGCCAGCAGCAGGCTGTTCCTCACGCCGTGGATGGCGATCTTCTCCTTCA 2433 Query 133387 ATTCGTTCCAGTCCCACAGATTGTTGGAATGATAGACGCCGTTCTCGTCGTCGTAGTTGT 133446 ||||||||| ||| | | ||| || |||| || || | ||| Sbjct 2432 GCAGCTTCCAGTCCAGCAGTTCGGTGG----------GC--TTCT--TC-TCCCACATGT 2388 Query 133447 GAAAATGCAAAATACCCCTGCTCACCGGACTGTCCGTGTACGATTCATAGGGTCCGTTGA 133506 | |||| || ||| |||| || ||| | | | ||||| || ||||| ||| Sbjct 2387 CGTACTGCAGGATGCCCTTGCTGACGGGAGAGCCTGCGTACGTCTCGTAGGGGCCGAGCT 2328 Query 133507 TTTTGGCCAGCTCGCAGCTAGCCTCCAAAGCGGCAAAGTAAATGGTTTCCGCGATT-GAA 133565 ||||||||||||||| ||||||| ||||| ||| |||| || |||| ||| Sbjct 2327 CGGCGGCCAGCTCGCAGCTCGCCTCCAGGGCGGCGTGGTAGATGGCCTCGAAGATTTGAA 2268 Query 133566 TAGTTGACGAACCTG-GCATCGTCGCTATCGTAGGCGATGTCG-AGAAGAACAAACGCGT 133623 || || | | | ||| || || | ||| ||| | | | | || | || | || || | Sbjct 2267 TA-TTCA-GCAGCTGAGCCTCTTTGCTTTCGAACGGG-TAACGCATGAGGATGAAGGCAT 2211 Query 133624 CGGCCAAACCCTGTATGCCGACGCCGATGGGTCGATGTTTTTTATTGCTCCTCTCCGACT 133683 | |||||||| || | ||| | || || || | || || ||| | | |||| | Sbjct 2210 CCGCCAAACCTTGGACGCCAATTCCAATCGGCCTGTGGCGCTTGTTGGACTTTTCCGCTT 2151 Query 133684 CGGCCGTGGGATAGTGGTTGACGTCGATGATCTTGTTGAGATTGCGGACGATAATTTTAG 133743 ||| | ||||||| ||| | |||||||||||||| | ||| |||||| | ||| | Sbjct 2150 CGGGCACTGGATAGTAGTTAATTTCGATGATCTTGTTCAAATTCTTGACGATTACTTTGG 2091 Query 133744 TCAAATGTTTCAGCAAAACATAGTCAAATGTCTTGGCGTCGACGTCGACGCACTTGTTGA 133803 ||| | | ||| | ||||||| ||| || || || |||| || |||||| Sbjct 2090 TCACAGATGCCAGTTTTTTAAAGTCAAAAGTCC--GCTCCGGGGT-GACGTACATGTTGA 2034 Query 133804 CGGCAATACTGGCTAGATTACAAACGGCCGTCTCGTTCTCGTCGCAATACTGGACGATCT 133863 ||||| ||| |||||||| || || ||| | | | | |||| || ||| | Sbjct 2033 GCGCAATTGAGGCCAGATTACACACCGCTACCTCATCGTGGCTGGTGTACTCGATGATTT 1974 Query 133864 CGGCGCAGAGGTTGCTGCATTTGATGGTGCCCAAAtttttttGATTGCTAAAGTTATTGC 133923 | | ||||||||||||| | ||||||||||||| ||| | ||| ||||| | |||| Sbjct 1973 CTGTGCAGAGGTTGCTGGACTTGATGGTGCCCAGATTCTGTTGGTTGCTCTTCCTGTTGC 1914 Query 133924 AATGATCCTTGTATAGCATGTACGGCCCGCCGGTTTC 133960 | || ||||| |||||||| ||| || ||||| Sbjct 1913 AGGCGTCTTTGTACAGCATGTATGGCGTACCAGTTTC 1877 >seq270369 Length=13262 Score = 84.2 bits (92), Expect = 2e-11 Identities = 85/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 133851 TACTGGACGATCTCGGCGCAGAGGTTGCTGCATTTGATGGTGCCCAAAtttttttGATTG 133910 |||| |||||||| | ||| || |||||| ||||||||||||||| ||| | || ||| Sbjct 6571 TACTCTACGATCTCCGTGCACAGATTGCTGGATTTGATGGTGCCCAGATTCTGCTGGTTG 6630 Query 133911 CTAAAGTTATTGCAATGATCCTTGTATAGCATGTACGGCCCGCCGGTTTCG 133961 || | ||||| |||||||| |||||||| ||| |||||||||| Sbjct 6631 CTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTATGGCGTGCCGGTTTCG 6681 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 432354014412544