Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20steindachneri_20[genbank_20GCA_5F001910785.1_202016-12- 20] 279,232 sequences; 648,011,071 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq95031 464 6e-126 seq270369 123 2e-23 >seq95031 Length=3790 Score = 464 bits (514), Expect = 6e-126 Identities = 1037/1544 (67%), Gaps = 39/1544 (3%) Strand=Plus/Minus Query 22409 TCGTTCCACAAACCGATGGCGGTCAAATCTTTGACCAGATGACGGTTCACCACTTGAAAC 22468 ||| |||||| || | | |||| ||||||| ||||||| |||| || | |||||| Sbjct 2640 TCGCTCCACAGCCCTCTCTCCGTCAGGTCTTTGAGCAGATGAGGGTTGACGATCTGAAAC 2581 Query 22469 TCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGAAAGATTCATTG 22528 || ||||| | ||| | ||| ||| |||||| ||| | | ||||| || || ||| Sbjct 2580 TCTCCGGAGAGGACCCTGCGGGTGTAGATGTTGCTGGTGTAGGCTTCGATGGACTCGTTG 2521 Query 22529 TTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGTAGCGAGTTTCTC 22588 || ||||| ||||| ||||| || || || |||||||| |||| ||| || ||| ||| Sbjct 2520 TTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGCATCGGGGCCAGCAGCAGGCTGTTCCTC 2461 Query 22589 AAGCCGTGCTTTGAAATTTTACTCTTGAGCATCGACCAGTCCCACAGATCGGACGGCGTC 22648 | |||||| | | || || ||| |||| | ||||||| ||| |||| ||| || Sbjct 2460 ACGCCGTGGATGGCGATCTTCTCCTTCAGCAGCTTCCAGTCCAGCAGTTCGGTGGGCTTC 2401 Query 22649 ACATTGTCCCACATATCGTATTGCAACACGCCGCGACTCGCCGGGCTGCCTTCGTACGTT 22708 || |||||||| ||||| |||| | ||| || | || |||| ||||||| Sbjct 2400 ---TTCTCCCACATGTCGTACTGCAGGATGCCCTTGCTGACGGGAGAGCCTGCGTACGTC 2344 Query 22709 TCGTACGGACCATATATCG-CGGCAAGTTCGCAGCTCGCCTCCAACGCGCCGTAATATAT 22767 ||||| || || | ||| |||| || |||||||||||||||| ||| ||| || || Sbjct 2343 TCGTAGGGGCCG-AGCTCGGCGGCCAGCTCGCAGCTCGCCTCCAGGGCGGCGTGGTAGAT 2285 Query 22768 AGTCTCGAAGATTTTCTTGTTCAATTCGGCGGCGGCGAC-----GCTTTCGTACGGCATA 22822 | ||||||||||| | |||| || || | | | ||||||| |||| | Sbjct 2284 GGCCTCGAAGATTTGAAT-----ATTCAGCAGCTGAGCCTCTTTGCTTTCGAACGGGTAA 2230 Query 22823 CGCATCATCACGAACGCGTCCGCCATACCCTGAACGCCTATACCGATCGGTCGGTTTTTC 22882 ||||| | | ||| || ||||||| ||| || ||||| || || ||||| | || | Sbjct 2229 CGCATGAGGATGAAGGCATCCGCCAAACCTTGGACGCCAATTCCAATCGGCCTGTGGCGC 2170 Query 22883 AGATTCGACACTTTTGCCTCGGGCAAAGGATACCAATTCGAATCGATTGTTCTGTTCAAG 22942 || ||| || || ||||||| ||||| | || ||||| | ||||||| Sbjct 2169 TTGTTGGACTTTTCCGCTTCGGGCACTGGATAGTAGTTAATTTCGATGATCTTGTTCAAA 2110 Query 22943 TTTCTGGTCACAATTTTCGTTATNNNNNNNNNNNNNTCAAAGTCGTAAACGCCCGAT--T 23000 || || | | ||| || | | |||||| ||| | ||| | Sbjct 2109 TTCTTGACGATTACTTTGGTCACAGATGCCAGTTTTTTAAAGTC--AAAAGTCCGCTCCG 2052 Query 23001 GTACAACAAACTTGTTGACGGCGATCGAGGCAAGATTGCATACGGCCACCTCGTCTTTGG 23060 | || || |||||| || || ||||| ||||| || || || ||||| || | | Sbjct 2051 GGGTGACGTACATGTTGAGCGCAATTGAGGCCAGATTACACACCGCTACCTCATCGTGGC 1992 Query 23061 ACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTGCCCAAATTGCTCT 23120 |||||||| | ||||| || || || ||||| |||| || ||||||| ||| | Sbjct 1991 TGGTGTACTCGATGATTTCTGTGCAGAGGTTGCTGGACTTGATGGTGCCCAGATTCTGTT 1932 Query 23121 GGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCT 23180 ||||||| || | ||||| | || ||||| |||||||| ||||| || || || || Sbjct 1931 GGTTGCTCTTCCTGTTGCAGGCGTCTTTGTACAGCATGTATGGCGTACCAGTTTCTGTCT 1872 Query 23181 GCGACTCGATGATCGCTCGCCACATAGTCTGAG-CGTGAACACGTCGCACGTACCTGCCT 23239 | |||||||| | || |||||| ||||| | | | |||| ||| | || | || Sbjct 1871 GGGACTCGATAACGGCGTGCCACAACTGCTGAGCCTTCACCACG-CGCTTGAACTTCCCC 1813 Query 23240 TCTTCCTCGTACTTTTGGTACAACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCG 23299 | | ||| || ||| | | || || || | || | || ||| ||| || Sbjct 1812 TGCTTCTCATAGGAGGTGTAGAGCTTTTCGAACTCCTCCCCCCAGCACTCGTCCAACCCT 1753 Query 23300 GGCGATTGCATCGGACACATGAGACTCCACATTGAGTCATTTTCAACGCGTCTCATAAAA 23359 || | | | |||||||| ||| ||| || | || || | |||| || Sbjct 1752 GGGCACTCGTTGGGACACATCAGAGACCAGTCCTCGTTGCTCTCCACTCTCTTCATGAAC 1693 Query 23360 AGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTG 23419 || || || ||||| || ||||||| || || | ||| | | |||||| || |||||| Sbjct 1692 AGGTCGGGGATCCACAGGCCGTAGAAAAGGTCCCTGGCTCTCTGCTCCTCCTTTCCGGTG 1633 Query 23420 TTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCA 23479 ||||| || | |||| ||||| |||||||| || ||||| ||||| ||||| | ||| Sbjct 1632 TTCTTCTTTAGCTCCAGGAAGTCAAACACGTCGGCGTGCCAGGGCTCCAGGTACATGGCG 1573 Query 23480 AACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACT 23539 || || || |||||||| ||||||||||| ||||||||||| |||||||||||||| ||| Sbjct 1572 AAGGCTCCTGGTCTCTTGTTGCCGCCCTGGTCGACGTAACGTGCCGTGTTGTTGTAAACT 1513 Query 23540 CTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCCCGCCA---CACTCGAACCT 23596 || ||||| || |||| |||||||| |||| ||| || | ||| || Sbjct 1512 CTCAGCATGGGGACGACCCCGTTGGAGTTGCCGTTGGTGCCGGCGATGTAGCTC---CCC 1456 Query 23597 TTTGCTCGAACGTTG-TGAACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCATCGC 23655 ||| || | | | | | || | ||| || || ||| | ||||| || || | || Sbjct 1455 GTTGTTCTGATGCAGCTTATCG-CCACACCAATTCCCCCGGCTGATTTGGAGATGAGGGC 1397 Query 23656 GCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAA 23715 |||||| ||||| |||||||| ||||| ||||||||||| ||||| | |||| || ||| Sbjct 1396 GCATTGCTTCAGCGTGTCGTAAATGCCTTCGATGCTGTCGTCTTTCATGGCGAGCAGGAA 1337 Query 23716 ACACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGT 23775 || |||| || | || || | || ||| || || ||| |||||| || Sbjct 1336 GCAGCTGGACAGCTGTGGCCTGTTGGTTCCTGCGTTGAAGAGCGTGGGGGAGGCGTGGGT 1277 Query 23776 AAAGTATCCA-TTC---GACATTAGATTGTACGTGTCGATGGCGGCATCAATGTCC-TCT 23830 || ||| ||| |||| || |||||||| || ||||| || || |||||| ||| Sbjct 1276 GAA----CCACTTCTCTGACAGCAGGTTGTACGTCTCAATGGCTGCGTCGATGTCCATCT 1221 Query 23831 CCGTGTATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCTCGACCGTGACGCCG 23890 ||| || |||| || || | ||| | ||||| || |||| |||| || |||| Sbjct 1220 -TGTGGATCCCGACGGACACTCTCATGAGCATGTGCTGCGGTCGCTCGGCCACTTTGCCG 1162 Query 23891 TTAATTTTGAACAGATATGAACGTTGCATCGTTTTAAATCCAAA 23934 || || || ||||| || || || | || || || || || || Sbjct 1161 TTGATCTTCAACAGGTAGGACCGCTCCAGAGTCTTGAAGCCGAA 1118 >seq270369 Length=13262 Score = 123 bits (136), Expect = 2e-23 Identities = 122/158 (77%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 23047 CACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGT 23106 |||||| ||||| ||||||||||| || || || || |||||||| | || || || Sbjct 6552 CACCTCATCTTTACTTGTGTACTCTACGATCTCCGTGCACAGATTGCTGGATTTGATGGT 6611 Query 23107 GCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGT 23166 ||||| ||| ||||||||| || | ||||| | ||||||||||||||||| ||||| Sbjct 6612 GCCCAGATTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTATGGCGT 6671 Query 23167 GCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACA 23204 ||| || ||| |||||| |||||||| || ||||| Sbjct 6672 GCCGGTTTCGGTCTGCGATTCGATGATGGCGTACCACA 6709 Score = 123 bits (136), Expect = 2e-23 Identities = 121/156 (78%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 23340 TTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGC 23399 |||| || ||| ||||||| || || || ||||| | ||| | ||||| || | ||| | Sbjct 7081 TTTCCACTCGTTTCATAAACAGGTCTGGGATCCACATGGCGAAAAACAGGTCTCTGGCCC 7140 Query 23400 GCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCC 23459 | ||||||||| ||||||||||| ||||| ||||| ||||| ||||| || ||||| Sbjct 7141 TCTGCTCCTCTTTACCGGTGTTCTTCTTCAACTCCAAGAAGTCAAACACATCGAAATGCC 7200 Query 23460 ACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCT 23495 ||||||| ||||| || || || || || ||||||| Sbjct 7201 ACGGCTCCAGGTACACAGCGAAGGCCCCGGGTCTCT 7236 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 444210496957440