Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20steindachneri_20[genbank_20GCA_5F001910785.1_202016-12- 20] 279,232 sequences; 648,011,071 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq95031 486 2e-132 >seq95031 Length=3790 Score = 486 bits (538), Expect = 2e-132 Identities = 1280/1942 (66%), Gaps = 19/1942 (1%) Strand=Plus/Minus Query 62325 TTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGGTTA 62384 ||||| ||||| || |||| | |||||| || | || | || ||||| ||||| Sbjct 2652 TTCTTCATCTCCTCGCTCCACAGCCCTCTCTCCGTCAGGTCTTTGAGCAGATGAGGGTTG 2593 Query 62385 ACTACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCC 62444 || | || || ||||| || | || || || ||||| || || ||||| || | ||| Sbjct 2592 ACGATCTGAAACTCTCCGGAGAGGACCCTGCGGGTGTAGATGTTGCTGGTGTAGGCTTCG 2533 Query 62445 ACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAAT 62504 | ||||| || || |||| || || || || || || || ||||| || |||| || Sbjct 2532 ATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGCATCGGGGCCAGCAGC 2473 Query 62505 AAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGATGTTCCCAATTCCAAAGA 62564 | || || || | |||| | ||| || || || || | | ||| | | || Sbjct 2472 AGGCTGTTCCTCACGCCGTGGATGGCGATCTTCTCCTTCAGCAGCTTCCAGTCCAGCAGT 2413 Query 62565 TCCGACGG-TACAACANNNNNNNNNNNATATTGTAGAATACCGTTACTGGCGTACGATCC 62623 || | || | | | || || || || || || ||| || || || Sbjct 2412 TCGGTGGGCTTCTTCTCCCACATGTCG-TACTGCAGGATGCCCTTGCTGACGGGAGAGCC 2354 Query 62624 TACATATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAATGCACC 62683 | | || || || || || || || | || || | || |||||||| | || | Sbjct 2353 TGCGTACGTCTCGTAGGGGCCGAGCTCGGCGGCCAGCTCGCAGCTCGCCTCCAGGGCGGC 2294 Query 62684 GTAATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCAAATGG 62743 || || |||| || ||||| | |||| || || || || ||| || || || Sbjct 2293 GTGGTAGATGGCCTCGAAGATTTGAATATTCAGCAGCTGAGCCTCTTTGCTTTCGAACGG 2234 Query 62744 ATAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATG 62803 ||| | ||| || || || ||||| || ||||| || ||||| || || || || || Sbjct 2233 GTAACGCATGAGGATGAAGGCATCCGCCAAACCTTGGACGCCAATTCCAATCGGCCTGTG 2174 Query 62804 TCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATT 62863 | ||| || || |||| ||||| || | ||||| || ||||| || || || || || Sbjct 2173 GCGCTTGTTGGACTTTTCCGCTTCGGGCACTGGATAGTAGTTAATTTCGATGATCTTGTT 2114 Query 62864 GAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCCCATC 62923 | ||| |||| ||||||||| |||| |||||| ||| ||||| || || Sbjct 2113 CAAATTCTTGACGATTACTTTGGTCACAGATGCCAGTTTTTTAAAGTCAAAAGTCCGCTC 2054 Query 62924 TA---TTACAAACATGTTCAATGCAACAGATGCCAGATTACACACGGCTACCTCAT--TA 62978 | || ||||||| | |||| || |||||||||||||| |||||||||| | Sbjct 2053 CGGGGTGACGTACATGTTGAGCGCAATTGAGGCCAGATTACACACCGCTACCTCATCGTG 1994 Query 62979 GCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTT 63038 || | || | || || || ||||| || || || ||||||| || || | ||| Sbjct 1993 GCTGGTG--TACTCGATGATTTCTGTGCAGAGGTTGCTGGACTTGATGGTGCCCAGATTC 1936 Query 63039 TGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCA 63098 ||||| || ||||| |||| || || || || || || ||| |||| ||||||||||| Sbjct 1935 TGTTGGTTGCTCTTCCTGTTGCAGGCGTCTTTGTACAGCATGTATGGCGTACCAGTTTCT 1876 Query 63099 ATCTGAGATTCTATAATCGCTTTCCAGA-CGACTCGAGCCTTTATTATAGATTTGTATCT 63157 |||| || || |||| || | ||| | | || ||||||| | | ||| | | Sbjct 1875 GTCTGGGACTCGATAACGGCGTGCCACAACTGCT-GAGCCTTCACCACGCGCTTGAACTT 1817 Query 63158 CCTTTCTCTTTCGTATAGA--GTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCC 63215 || || ||| |||| || || | ||||||||| || ||||| | |||| Sbjct 1816 CCC--CTGCTTCTCATAGGAGGTGTAGAGCTTTTCGAACTCCTCCCCCCAGCACTCGTCC 1759 Query 63216 AATCTAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTC 63275 || | || || || | |||||||||| ||||| || ||| || ||||| ||| Sbjct 1758 AACCCTGGGCACTCGTTGGGACACATCAGAGACCAGTCCTCGTTGCTCTCCACTCTCTTC 1699 Query 63276 ATAAAGAGATCAGGAATCCAAAGAGC-TATAAATAGATCTCTTGTTCTATGTTCCTCGTT 63334 || || || || || ||||| || | || ||| || || || | ||| || ||||| || Sbjct 1698 ATGAACAGGTCGGGGATCCACAGGCCGTAGAAA-AGGTCCCTGGCTCTCTGCTCCTCCTT 1640 Query 63335 TCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTA 63394 ||| || ||||| || || || ||||| | | | || | ||||| || |||| ||| Sbjct 1639 TCCGGTGTTCTTCTTTAGCTCCAGGAAGTCAAACACGTCGGCGTGCCAGGGCTCCAGGTA 1580 Query 63395 TATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATT 63454 ||||| | |||| || | ||||| || ||||| || | ||| | || ||||| || Sbjct 1579 CATGGCGAAGGCTCCTGGTCTCTTGTTGCCGCCCTGGTCGACGTAACGTGCCGTGTTGTT 1520 Query 63455 ATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCC 63514 |||||||||| ||| || | | ||||| || | || ||||| |||| ||| |||| Sbjct 1519 GTAAACTCTCAGCATGGGGACGACCCCGTTGGAGTTGCCGTTGGTGCCGGCGATGTAGCT 1460 Query 63515 TCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAA 63574 || | | | || || || | | ||| |||||||| || ||| ||||| | Sbjct 1459 CCCCGTTGTTCTGATGCAGCTTATCGCCACACCAATTCCCCCGGCTGATTTGGAGATGAG 1400 Query 63575 TGCGCATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAG 63634 |||||| | || | |||||| || |||||||| ||||| || || ||||| || || Sbjct 1399 GGCGCATTGCTTCAGCGTGTCGTAAATGCCTTCGATGCTGTCGTCTTTCATGGCGAGCAG 1340 Query 63635 AAAACAGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTG 63694 || ||||| |||| || | | | ||||| || || || | || || || ||||| Sbjct 1339 GAAGCAGCTGGACAGCTGTGGCCTGTTGGTTCCTGCGTTGAAGAGCGTGGGGGAGGCGTG 1280 Query 63695 CGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTG 63754 || ||||| || || || || || |||||||||||||| |||| ||| || ||| | Sbjct 1279 GGTGAACCACTTCTCTGACAGCAGGTTGTACGTCTCAATGGCTGCGTCGATGTCCATCTT 1220 Query 63755 ATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTT 63814 || || || || | || | ||| | ||||||||| |||| || | | |||| ||| Sbjct 1219 GTGGATCCCGACGGACACTCTCATGAGCATGTGCTGCGGTCGCTCGGCCACTTTGCCGTT 1160 Query 63815 TATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTC 63874 || ||||||| |||||| |||| ||| || || || || ||||||| || || || Sbjct 1159 GATCTTCAACAGGTAGGACCGCTCCAGAGTCTTGAAGCCGAAGAAGTTGTAGGAGAAATC 1100 Query 63875 TCGTTCGTAAATAATAACCGAATTGAGCTTATCCTTATATTTGTTAACTATATCCATGGT 63934 || ||| |||| || |||| ||||| || || | | | ||| || || | || Sbjct 1099 TCTGTCGAAAATGATGGCCGAGTTGAGGCGGTCTTTGTTCTCGAGAACGATGTCGAGCGT 1040 Query 63935 AATACTT-GAAATAATCGGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAAT 63993 | ||| || || || || || || ||||| || || | |||||| | | | Sbjct 1039 -CTCCTTGGAGATCATGGGCGAGTGGCGGTCATTTAAGGGGTTGATGTAGTTGTACAGGT 981 Query 63994 CCTCCATCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATATGGCTATTC 64053 |||||||||| ||||| || | || || || || ||||| || ||||| | ||| || | Sbjct 980 CCTCCATCACGTCACTGAACACCTTCTTCGTCTCTTTGTGCAGGTTTGAGACGGCGATCC 921 Query 64054 TGGCGGCTAGAATGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTG 64113 || || || ||||| || || || || | || || |||||| | || || || | Sbjct 920 GTGCAGCGAGTATGGCGTAGTCGGGGTGCTTAGTTGTGAGAGTGGCGGTGATCTCAGCAG 861 Query 64114 CCAGAGTGTCCAATTCTACCGTTGTTACTCCATTATATATTCCTTGAATAACCTTCATAG 64173 |||| ||||| | || || || || || || | || | || || || |||||||| | Sbjct 860 CCAGCGTGTCGAGCTCCACGGTGGTGACGCCGCTGTACAAACCCTGGATCACCTTCATGG 801 Query 64174 CTATTTTAATAGGATCTATATGATCCGTGTTTAAGCCATAGCACAATTTTCTAATACGAG 64233 || | ||||| | | || | ||| | || ||||||| || || ||| Sbjct 800 TGATCTGGGCCGGATCCACAAAGTCAGAGTTCAGTCCGTAGCACAGCTTCTGGATGCGAC 741 Query 64234 ACGTGATTTTATCAAACATGAC 64255 | |||||||| || |||||||| Sbjct 740 AGGTGATTTTGTCGAACATGAC 719 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627619284648960