Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20steindachneri_20[genbank_20GCA_5F001910785.1_202016-12- 20] 279,232 sequences; 648,011,071 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq95031 150 2e-31 >seq95031 Length=3790 Score = 150 bits (166), Expect = 2e-31 Identities = 852/1351 (63%), Gaps = 15/1351 (1%) Strand=Plus/Minus Query 37123 AGGTGTGGATTTACAACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTA 37182 || || || || || | |||||| ||||| || | || || | || || || ||||| Sbjct 2604 AGATGAGGGTTGACGATCTGAAACTCTCCGGAGAGGACCCTGCGGGTGTAGATGTTGCTG 2545 Query 37183 GTATATGGTTCAATGGACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATT 37242 || || | ||| |||||||| || || | | || || | || || || || ||||| Sbjct 2544 GTGTAGGCTTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGCATC 2485 Query 37243 GGTGCTATTAGAAGGCTATTTCTCAATCCATGTGTATTAATTCTCTTTTTTAGTTCATTC 37302 || || | || ||||| || |||| || || | || ||| || || ||| Sbjct 2484 GGGGCCAGCAGCAGGCTGTTCCTCACGCCGTGGATGGCGATCTTCTCCTTCAGCAGCTTC 2425 Query 37303 CAATCCCATAAATCTGTTGGGTTCTTTAACCACATATCATATTGTAGAATACCTTTACTC 37362 || ||| | || || || ||||| |||||| || || || || || || || || Sbjct 2424 CAGTCCAGCAGTTCGGTGGGCTTCTTCTCCCACATGTCGTACTGCAGGATGCCCTTGCTG 2365 Query 37363 GCTGGAGAATCGTTATATGTCTCATAAGGTCCGTAAATTTTAGCTAGTTCGCAACTAGAT 37422 | ||||| | || ||||| || || ||| || || ||||| || | Sbjct 2364 ACGGGAGAGCCTGCGTACGTCTCGTAGGGGCCGAGCTCGGCGGCCAGCTCGCAGCTCGCC 2305 Query 37423 TCTAGTGCGGCATAATATATTGTTTCGAAAATTTGTATATTTAATATTTTTGCTTCTTCG 37482 || || ||||| | || || | ||||| ||||| ||||| | | | || |||| | Sbjct 2304 TCCAGGGCGGCGTGGTAGATGGCCTCGAAGATTTGAATATTCAGCAGCTGAGCCTCTTTG 2245 Query 37483 CTATCGAATGCATAGCCCAATAATATAAACACATCAGCCAAACCCTGAACACCGATACCT 37542 || ||||| | || | || | || || |||| |||||||| || || || || || Sbjct 2244 CTTTCGAACGGGTAACGCATGAGGATGAAGGCATCCGCCAAACCTTGGACGCCAATTCCA 2185 Query 37543 ATGGGTCTATGTTTCTTATTAGATCTAGACGATTCTATCACTGGATAATAATTGATATCT 37602 || || || || ||| || || | || ||| ||||||||| || || || || Sbjct 2184 ATCGGCCTGTGGCGCTTGTTGGACTTTTCCGCTTCGGGCACTGGATAGTAGTTAATTTCG 2125 Query 37603 ATTATTTTATTTAGATTTTTAACTAGTATTTTCGTAATTATTCTCAACTTGTCGAA--CA 37660 || || || || | ||| || || | || ||| || | | || || | || || Sbjct 2124 ATGATCTTGTTCAAATTCTTGACGATTACTTTGGTCACAGATGCCAGTTTTTTAAAGTCA 2065 Query 37661 TAAATACGTTATTAT-TAACAAATTTACTCAACGAAATAGATCCTAGATTACATACAGCA 37719 || | || | | || | | | | || ||| || | |||||||| || || Sbjct 2064 AAAGTCCGCTCCGGGGTGACGTACATGTTGAGCGCAATTGAGGCCAGATTACACACCGCT 2005 Query 37720 ACTTCATCTTCGTTACTAAATTGTATAATCTCTGTACAGAGATTACTCGATCTAATTGTT 37779 || ||||| | | | | | | || || ||||| ||||| || || || | || || Sbjct 2004 ACCTCATCGTGGCTGGTGTACTCGATGATTTCTGTGCAGAGGTTGCTGGACTTGATGGTG 1945 Query 37780 CCCAAATTGCTTTGATTGGATTTTTTATTACAAGAATCTTTATATAGTATATACGGCGTT 37839 |||| ||| ||| ||| || | || || | ||||| || || || || ||||| Sbjct 1944 CCCAGATTCTGTTGGTTGCTCTTCCTGTTGCAGGCGTCTTTGTACAGCATGTATGGCGTA 1885 Query 37840 CCTTGTTCTATTTGAGCCTCGATAATAGATTTCCATAAACTTCTT-GCTTTAACGAT-CG 37897 || |||| | || | |||||||| | | ||| || || || || || || | || Sbjct 1884 CCAGTTTCTGTCTGGGACTCGATAACGGCGTGCCACAA-CTGCTGAGCCTTCACCACGCG 1826 Query 37898 CTTTAAtttttttCTTTGTTTCGTATTCTA--TATATAATTTGTTAAAATCATTCCCCCA 37955 ||| || || | || ||| || | | || | || | || || | |||||| Sbjct 1825 CTTGAACTTC---CCCTGCTTCTCATAGGAGGTGTAGAGCTTTTCGAACTCCTCCCCCCA 1769 Query 37956 TACATCGCATAATCCTGGACATTCGCATGGACACATTAGAGACCATTCTTCATCTTTTTC 38015 ||| || ||||| || ||| |||||||| |||||||| || || | | || Sbjct 1768 GCACTCGTCCAACCCTGGGCACTCGTTGGGACACATCAGAGACCAGTCCTCGTTGCTCTC 1709 Query 38016 TACGCGTTCCATAAATAAATCAGGTACCCATAATGCAGTAAATAAA-TCTTTGGTTCTAT 38074 || | | ||| || | || || | ||| | || ||| | || || ||| ||| | Sbjct 1708 CACTCTCTTCATGAACAGGTCGGGGATCCACAG-GCCGTAGAAAAGGTCCCTGGCTCTCT 1650 Query 38075 ATTCTTCGTTCCCTACATTCTTTCTTAAGCTT-AGAAAATCGAATATATCAGCGTGCCAT 38133 || || || || ||||| ||| |||| || || || || | || |||||||| Sbjct 1649 GCTCCTCCTTTCCGGTGTTCTT-CTTTAGCTCCAGGAAGTCAAACACGTCGGCGTGCCAG 1591 Query 38134 GGTTCTATATAAATCGACATTGCTCCTGGTCTTTTATCACCTCCCTGATTAATATATCTA 38193 || || | || || | | ||||||||||| || | || ||||| | | || | Sbjct 1590 GGCTCCAGGTACATGGCGAAGGCTCCTGGTCTCTTGTTGCCGCCCTGGTCGACGTAACGT 1531 Query 38194 ACTGTGTTATTATATATTCTTAACATAGGTACTATACCATTAGATTTGCCGTTTATACCG 38253 | ||||| || || | ||| | ||| || || | || || || |||||||| | ||| Sbjct 1530 GCCGTGTTGTTGTAAACTCTCAGCATGGGGACGACCCCGTTGGAGTTGCCGTTGGTGCCG 1471 Query 38254 GATATATAAGTACCCTTAGCTCGTATATTACTTATCGACAATCCTATTCCACCTGCATGT 38313 | || || | ||| | | || || ||||||| || || ||||| || || | Sbjct 1470 GCGATGTAGCTCCCCGTTGTTCTGATGCAGCTTATCGCCACACCAATTCCCCCGGCTGAT 1411 Query 38314 TTTGATATTAAAGCGCATTGTTTTAACGTATCAAATATACCTTCTATACTGTCATCCTTT 38373 || || || | |||||||| || | ||| || | || ||||| || ||||| || || Sbjct 1410 TTGGAGATGAGGGCGCATTGCTTCAGCGTGTCGTAAATGCCTTCGATGCTGTCGTCTTTC 1351 Query 38374 ATTGGTAGTATAAAACAACTAGACATTTGAGGCAATGGAGTTCCGGCGTTAAATAATGTA 38433 || | || | || || || |||| || ||| ||||| ||||| || | || Sbjct 1350 ATGGCGAGCAGGAAGCAGCTGGACAGCTGTGGCCTGTTGGTTCCTGCGTTGAAGAGCGTG 1291 Query 38434 GGAGATGCATGTATGAACCATTTTTCCGACA 38464 || || || || ||||||| || || |||| Sbjct 1290 GGGGAGGCGTGGGTGAACCACTTCTCTGACA 1260 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 466889461038080