Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20steindachneri_20[genbank_20GCA_5F001910785.1_202016-12- 20] 279,232 sequences; 648,011,071 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq95031 509 2e-139 seq270369 84.2 3e-11 >seq95031 Length=3790 Score = 509 bits (564), Expect = 2e-139 Identities = 1294/1946 (66%), Gaps = 27/1946 (1%) Strand=Plus/Minus Query 78997 TTCTTGATCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTA 79056 ||||| ||||| || |||| | |||||| || | || | || ||||| || || Sbjct 2652 TTCTTCATCTCCTCGCTCCACAGCCCTCTCTCCGTCAGGTCTTTGAGCAGATGAGGGTTG 2593 Query 79057 ACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCC 79116 || | ||||| ||||| || | || || || ||||| || || ||||| || | ||| Sbjct 2592 ACGATCTGAAACTCTCCGGAGAGGACCCTGCGGGTGTAGATGTTGCTGGTGTAGGCTTCG 2533 Query 79117 ACCGATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAAT 79176 | || || || || |||| || || || || || ||||| ||||| || |||| || Sbjct 2532 ATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGCATCGGGGCCAGCAGC 2473 Query 79177 AAACTATTTCTAAGACCGTATGATCT-GATTTTATCTTTTAG-AGATTCCCAATCCCAAA 79234 | || || || | |||| ||| ||| || || || || || |||| | ||| | Sbjct 2472 AGGCTGTTCCTCACGCCGTG-GATGGCGATCTTCTCCTTCAGCAGCTTCC-AGTCCAGCA 2415 Query 79235 GATCAGACGGGACAACATTCCAAAGATCATATTGTAGAATACCGTTACTAGCGTATGATC 79294 | || | || | ||| | || || || || || || || || || || | Sbjct 2414 GTTCGGTGGGCTTCTTCTCCCACATGTCGTACTGCAGGATGCCCTTGCTGACGGGAGAGC 2355 Query 79295 CTGTGTATGTTTCATAAGGTCCTTCCTTTTCGGCTAATTCACAACTCGCCTCTAATGCTC 79354 ||| ||| || || || || || || |||| | || || |||||||| | || Sbjct 2354 CTGCGTACGTCTCGTAGGGGCCGAGCTCGGCGGCCAGCTCGCAGCTCGCCTCCAGGGCGG 2295 Query 79355 CGTAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGGCTATCAAATG 79414 ||| || |||| ||||| || | |||| || || || ||| ||| || || | Sbjct 2294 CGTGGTAGATGGCCTCGAAGATTTGAATATTCAGCAGCTGAGCCTCTTTGCTTTCGAACG 2235 Query 79415 GATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTAT 79474 | ||| | ||| || || || || || || ||||| || ||||| || || || || | Sbjct 2234 GGTAACGCATGAGGATGAAGGCATCCGCCAAACCTTGGACGCCAATTCCAATCGGCCTGT 2175 Query 79475 GTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTAT 79534 | | ||| || || |||| ||||| || | ||||| || ||||| || || || || | Sbjct 2174 GGCGCTTGTTGGACTTTTCCGCTTCGGGCACTGGATAGTAGTTAATTTCGATGATCTTGT 2115 Query 79535 TGAGATTCCTGACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAATCGTCCA- 79593 | | |||| |||| ||||||||| |||| ||||| ||| ||||| |||| Sbjct 2114 TCAAATTCTTGACGATTACTTTGGTCACAGATGCCAGTTTTTTAAAGTCAAAA-GTCCGC 2056 Query 79594 TCTA---TTACAAACATGTTCAACGCGACAGATGCCAGATTACAAACGGCTACCTCAT-- 79648 || | || ||||||| | ||| | || ||||||||||| || |||||||||| Sbjct 2055 TCCGGGGTGACGTACATGTTGAGCGCAATTGAGGCCAGATTACACACCGCTACCTCATCG 1996 Query 79649 TAGCATCCGCATATTGTATTATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAAT 79708 | || | || | || ||||| ||||||||||| || |||| ||||| || | || Sbjct 1995 TGGCTGGTG--TACTCGATGATTTCTGTGCAGAGGTTGCTGGACTTGATGGTGCCCAGAT 1938 Query 79709 TTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAACGGAGTACCAGTTT 79768 | ||||| || ||||| |||| || || || || || || ||| | || |||||||||| Sbjct 1937 TCTGTTGGTTGCTCTTCCTGTTGCAGGCGTCTTTGTACAGCATGTATGGCGTACCAGTTT 1878 Query 79769 CAATCTGAGATTCTATAATCGCTTTCCAGA-CGACTCGAGCCTTTATTATAGACTTGTA- 79826 | |||| || || |||| || | ||| | | || ||||||| | | |||| | Sbjct 1877 CTGTCTGGGACTCGATAACGGCGTGCCACAACTGCT-GAGCCTTCACCACGCGCTTGAAC 1819 Query 79827 -TCTCTT--TTCTCTTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAACATC 79883 || | | ||||| | | ||||| | | ||||||||| || ||||| || Sbjct 1818 TTCCCCTGCTTCTCATAGGAG--GTGTAGAGCTT--TTCGAACTCCTCCCCCCAGCACTC 1763 Query 79884 GTCTAATCCAGGACATTCGTCAGGACACATCAACGACCACTCTCCATCATCCTTTACTCG 79943 ||| || || || || |||| |||||||||| ||||| || | | || |||| Sbjct 1762 GTCCAACCCTGGGCACTCGTTGGGACACATCAGAGACCAGTCCTCGTTGCTCTCCACTCT 1703 Query 79944 TTTCATAAAGAGATCAGGAATCCAAAGAGC-TATAAATAGATCTCTGGTTCTATGCTCCT 80002 ||||| || || || || ||||| || | || ||| || || |||| ||| ||||||| Sbjct 1702 CTTCATGAACAGGTCGGGGATCCACAGGCCGTAGAAA-AGGTCCCTGGCTCTCTGCTCCT 1644 Query 80003 CGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCA 80062 | ||||| || ||||| || || || ||||| | | | || | ||||| || |||| Sbjct 1643 CCTTTCCGGTGTTCTTCTTTAGCTCCAGGAAGTCAAACACGTCGGCGTGCCAGGGCTCCA 1584 Query 80063 AGTATATGGCCATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGT 80122 ||| ||||| | |||| |||| ||||| || ||||| || | ||| | || |||| Sbjct 1583 GGTACATGGCGAAGGCTCCTGGTCTCTTGTTGCCGCCCTGGTCGACGTAACGTGCCGTGT 1524 Query 80123 TATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATAT 80182 | || |||||||||| ||| || | | || ||||| | || ||||| |||| ||| | Sbjct 1523 TGTTGTAAACTCTCAGCATGGGGACGACCCCGTTGGAGTTGCCGTTGGTGCCGGCGATGT 1464 Query 80183 AGCTTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGA 80242 |||| || | | | || || || | | ||| |||||||| || ||| |||| Sbjct 1463 AGCTCCCCGTTGTTCTGATGCAGCTTATCGCCACACCAATTCCCCCGGCTGATTTGGAGA 1404 Query 80243 TTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATGCTATCATCAATCATGTTAA 80302 | | |||||| | || | ||| || || ||||| || ||||| || || ||||| | Sbjct 1403 TGAGGGCGCATTGCTTCAGCGTGTCGTAAATGCCTTCGATGCTGTCGTCTTTCATGGCGA 1344 Query 80303 GTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAG 80362 | || || ||||| |||| || | | | ||||| || || || | || || || | Sbjct 1343 GCAGGAAGCAGCTGGACAGCTGTGGCCTGTTGGTTCCTGCGTTGAAGAGCGTGGGGGAGG 1284 Query 80363 CGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCC 80422 |||| || ||||| || || ||||| || |||||||||||||| |||| || || ||| Sbjct 1283 CGTGGGTGAACCACTTCTCTGACAGCAGGTTGTACGTCTCAATGGCTGCGTCGATGTCCA 1224 Query 80423 ATTGATGAATTCCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGT 80482 | || || || || | || | ||| | ||||||||| |||| || | | ||| Sbjct 1223 TCTTGTGGATCCCGACGGACACTCTCATGAGCATGTGCTGCGGTCGCTCGGCCACTTTGC 1164 Query 80483 TATTTATTTTCAACAAGTAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAA 80542 || || ||||||| ||| || |||| ||| || || || || ||||||| || | Sbjct 1163 CGTTGATCTTCAACAGGTAGGACCGCTCCAGAGTCTTGAAGCCGAAGAAGTTGTAGGAGA 1104 Query 80543 AGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAACTACATCCA 80602 | |||| ||| |||| || |||||||||| || || | | | ||| | || | Sbjct 1103 AATCTCTGTCGAAAATGATGGCCGAGTTGAGGCGGTCTTTGTTCTCGAGAACGATGTCGA 1044 Query 80603 TGGTGATACTT-GAAATAATCGGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGAAT 80661 || | ||| || || || || || || ||||| || || | |||||| | Sbjct 1043 GCGT-CTCCTTGGAGATCATGGGCGAGTGGCGGTCATTTAAGGGGTTGATGTAGTTGTAC 985 Query 80662 AAATCCTCCATCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCT 80721 | ||||||||||| ||||| || | || || || || ||||| || ||||| ||||| Sbjct 984 AGGTCCTCCATCACGTCACTGAACACCTTCTTCGTCTCTTTGTGCAGGTTTGAGACGGCG 925 Query 80722 ATTCTGGCGGCTAAAATGGCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCG 80781 || | || || | ||||| || || || || | || || |||||| | || || Sbjct 924 ATCCGTGCAGCGAGTATGGCGTAGTCGGGGTGCTTAGTTGTGAGAGTGGCGGTGATCTCA 865 Query 80782 GCTGCCAGAGTGTCCAATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTC 80841 || ||||| ||||| | || || || || || || | || | || ||||| |||||| Sbjct 864 GCAGCCAGCGTGTCGAGCTCCACGGTGGTGACGCCGCTGTACAAACCCTGGATCACCTTC 805 Query 80842 ATAGCTATTTTAATAGGATCTATATGATCAGTGTTTAAGCCATAACATAATTTTCTAATA 80901 || | || | ||||| | | |||| ||| | || || || | || || Sbjct 804 ATGGTGATCTGGGCCGGATCCACAAAGTCAGAGTTCAGTCCGTAGCACAGCTTCTGGATG 745 Query 80902 CGAGACGTGATTTTATCAAACATGAC 80927 ||| | |||||||| || |||||||| Sbjct 744 CGACAGGTGATTTTGTCGAACATGAC 719 >seq270369 Length=13262 Score = 84.2 bits (92), Expect = 3e-11 Identities = 118/166 (71%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 80678 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAAAA 80737 |||| || | ||| || || || ||||||||||| || || || || | || || | | Sbjct 9653 CACTGAACACTTTCTTGGTCTCTTTGTGTAGATTAGACACAGCAATCCGTGCAGCCAGGA 9712 Query 80738 TGGCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 80797 ||||| || || |||| || || |||||||| | || |||||||||||||||| Sbjct 9713 GAGCATAGTCAGGGTGTTTGGTGGTGAGGGTGGCTGCGGTCTCTGCTGCCAGAGTGTCCA 9772 Query 80798 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 80843 || || || || || ||| | || | || ||||| |||||||| Sbjct 9773 GCTCCACGGTGGTGACCCCACTGTACAGACCCTGGATCACCTTCAT 9818 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 715761754580480