Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20steindachneri_20[genbank_20GCA_5F001910785.1_202016-12- 20] 279,232 sequences; 648,011,071 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq95031 471 6e-128 seq270369 93.3 6e-14 >seq95031 Length=3790 Score = 471 bits (522), Expect = 6e-128 Identities = 1286/1949 (66%), Gaps = 33/1949 (2%) Strand=Plus/Minus Query 71080 TTTTTGATCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTA 71139 || || ||||| || |||| | |||||| || | || | || |||||||| || Sbjct 2652 TTCTTCATCTCCTCGCTCCACAGCCCTCTCTCCGTCAGGTCTTTGAGCAGATGAGGGTTG 2593 Query 71140 ACTACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCC 71199 || | ||||| ||||| || | || || || ||||| || || ||||| || | ||| Sbjct 2592 ACGATCTGAAACTCTCCGGAGAGGACCCTGCGGGTGTAGATGTTGCTGGTGTAGGCTTCG 2533 Query 71200 ACTGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAAT 71259 | ||||| || || |||| || || || || || || || ||||| || |||| || Sbjct 2532 ATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGCATCGGGGCCAGCAGC 2473 Query 71260 AGACTATTTCTAAGACCATGTGATCG-GATTTTATCTTTTAG-AGATTCCCAATTCCAAA 71317 || || || || | || || ||| | ||| || || || || || |||| | |||| Sbjct 2472 AGGCTGTTCCTCACGCCGTG-GATGGCGATCTTCTCCTTCAGCAGCTTCC--AGTCCAGC 2416 Query 71318 GATCCGATGG--TACAACNNNNNNNNNNNNNNNNNNNNNNATGCCGTTACTAGCGTATGA 71375 | || ||| | | | ||||| || || || || Sbjct 2415 AGTTCGGTGGGCTTCTTCTCCCACATGTCGTACTGCAGG-ATGCCCTTGCTGACGGGAGA 2357 Query 71376 TCCTGCATATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAATGC 71435 ||||| || || ||||| || || | |||| || || || |||||||| | || Sbjct 2356 GCCTGCGTACGTCTCGTAGGGGCCGAGCTCGGCGGCCAGCTCGCAGCTCGCCTCCAGGGC 2297 Query 71436 TCCATAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCAAA 71495 | | || |||| ||||| || | |||| || || || || ||| || || Sbjct 2296 GGCGTGGTAGATGGCCTCGAAGATTTGAATATTCAGCAGCTGAGCCTCTTTGCTTTCGAA 2237 Query 71496 TGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTCT 71555 || ||| | ||| || || || || || || ||||| |||||||| || || || || Sbjct 2236 CGGGTAACGCATGAGGATGAAGGCATCCGCCAAACCTTGGACGCCAATTCCAATCGGCCT 2177 Query 71556 GTGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTT 71615 ||| | ||| || || |||| ||||| || | ||||| || ||||| || || || || Sbjct 2176 GTGGCGCTTGTTGGACTTTTCCGCTTCGGGCACTGGATAGTAGTTAATTTCGATGATCTT 2117 Query 71616 ATTGAGATTTCTGACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAATCTCCC 71675 || | ||| |||| ||||||||| |||| ||||| ||| ||||| ||| Sbjct 2116 GTTCAAATTCTTGACGATTACTTTGGTCACAGATGCCAGTTTTTTAAAGTCAAAAGTCCG 2057 Query 71676 ATCTA---TTACAAACACGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCAT- 71731 || | || ||| ||| | |||| || ||||||||||| || |||||||||| Sbjct 2056 CTCCGGGGTGACGTACATGTTGAGCGCAATTGAGGCCAGATTACACACCGCTACCTCATC 1997 Query 71732 -TAGCATCGGCATATTGTATAATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAA 71790 | || || || | || ||||| ||||| || || || |||||||||| || | | Sbjct 1996 GTGGCT--GGTGTACTCGATGATTTCTGTGCAGAGGTTGCTGGACTTGATGGTGCCCAGA 1939 Query 71791 TTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATAAACGGAGTACCAGTT 71850 || ||||| || ||||| |||| || || || || || || || | || ||||||||| Sbjct 1938 TTCTGTTGGTTGCTCTTCCTGTTGCAGGCGTCTTTGTACAGCATGTATGGCGTACCAGTT 1879 Query 71851 TCAATCTGAGATTCTATAATCGCTTTCCAGA-CGACTCGAGCCTTTATTATATTCTTGTA 71909 || |||| || || |||| || | ||| | | || ||||||| | | |||| | Sbjct 1878 TCTGTCTGGGACTCGATAACGGCGTGCCACAACTGCT-GAGCCTTCACCACGCGCTTGAA 1820 Query 71910 --TCTCTT--TTCTCTTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAGCAT 71965 || | | ||||| | | ||||| | | ||||||||| || ||||| ||| Sbjct 1819 CTTCCCCTGCTTCTCATAGGAG--GTGTAGAGCTT--TTCGAACTCCTCCCCCCA-GCAC 1765 Query 71966 T-GTCTAATCCAGGACATTCATTCGGACACATCAATGACCACTC-TCCATCATCATTTAC 72023 | ||| || || || || || || |||||||||| ||||| || || | || | || Sbjct 1764 TCGTCCAACCCTGGGCACTCGTTGGGACACATCAGAGACCAGTCCTCGTTGCTC-TCCAC 1706 Query 72024 TCGTTTCATAAAGAGATCAGGAATCCAAAGAGC-TATAAATAGATCTCTGGTTCTATGCT 72082 || ||||| || || || || ||||| || | || ||| || || |||| ||| |||| Sbjct 1705 TCTCTTCATGAACAGGTCGGGGATCCACAGGCCGTAGAAA-AGGTCCCTGGCTCTCTGCT 1647 Query 72083 CCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTT 72142 |||| ||||| || ||||| || || || ||||| | | | || | ||||| || | Sbjct 1646 CCTCCTTTCCGGTGTTCTTCTTTAGCTCCAGGAAGTCAAACACGTCGGCGTGCCAGGGCT 1587 Query 72143 CCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGG 72202 ||| ||| ||||| | |||| || | ||||| || ||||| || | ||| | || | Sbjct 1586 CCAGGTACATGGCGAAGGCTCCTGGTCTCTTGTTGCCGCCCTGGTCGACGTAACGTGCCG 1527 Query 72203 TGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGA 72262 |||| || |||||||||| ||| || | | || ||||| || ||||| |||| || Sbjct 1526 TGTTGTTGTAAACTCTCAGCATGGGGACGACCCCGTTGGAGTTGCCGTTGGTGCCGGCGA 1467 Query 72263 TATAGCTTCCACTGGCACGAATATTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAG 72322 | ||||| || | | | || ||| || | | ||| |||||||| || ||| | Sbjct 1466 TGTAGCTCCCCGTTGTTCTGATGCAGCTTATCGCCACACCAATTCCCCCGGCTGATTTGG 1407 Query 72323 AGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGT 72382 |||| | |||||| | || | ||| || || ||||| || || || || || ||||| Sbjct 1406 AGATGAGGGCGCATTGCTTCAGCGTGTCGTAAATGCCTTCGATGCTGTCGTCTTTCATGG 1347 Query 72383 TAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAG 72442 || || || ||||| |||| || | | | ||||| || || || | || || | Sbjct 1346 CGAGCAGGAAGCAGCTGGACAGCTGTGGCCTGTTGGTTCCTGCGTTGAAGAGCGTGGGGG 1287 Query 72443 AAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATAT 72502 | ||||| || ||||| || || ||||| || |||||||||||||| |||| || || | Sbjct 1286 AGGCGTGGGTGAACCACTTCTCTGACAGCAGGTTGTACGTCTCAATGGCTGCGTCGATGT 1227 Query 72503 CCCATTGATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCT 72562 || | || || || || | || | ||| | ||| ||||| |||| || | | | Sbjct 1226 CCATCTTGTGGATCCCGACGGACACTCTCATGAGCATGTGCTGCGGTCGCTCGGCCACTT 1167 Query 72563 TGTTATTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATG 72622 || || || ||||||| |||||| |||| ||| || || || || ||||||| | Sbjct 1166 TGCCGTTGATCTTCAACAGGTAGGACCGCTCCAGAGTCTTGAAGCCGAAGAAGTTGTAGG 1107 Query 72623 AAAAGTCTCGTTCGTAAATAATAACCGAATTGAGTTTATCCTTATATTTGTTAACTATAT 72682 | || |||| ||| |||| || |||| ||||| || || | | | ||| || | Sbjct 1106 AGAAATCTCTGTCGAAAATGATGGCCGAGTTGAGGCGGTCTTTGTTCTCGAGAACGATGT 1047 Query 72683 CCATGGTGATACTT-GAAATAATCGGAGAATGTTTCCCATTTTTAGGATTAACATAGTTG 72741 | | || | ||| || || || || || || ||||| || || | |||||| Sbjct 1046 CGAGCGT-CTCCTTGGAGATCATGGGCGAGTGGCGGTCATTTAAGGGGTTGATGTAGTTG 988 Query 72742 AATAAATCCTCCATCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACG 72801 | | ||||||||||| ||||| || | || || || || ||||| || ||||| ||| Sbjct 987 TACAGGTCCTCCATCACGTCACTGAACACCTTCTTCGTCTCTTTGTGCAGGTTTGAGACG 928 Query 72802 GCTATTCTGGCGGCTAGAATGGCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATT 72861 || || | || || || ||||| || || || || | || || |||||| | || Sbjct 927 GCGATCCGTGCAGCGAGTATGGCGTAGTCGGGGTGCTTAGTTGTGAGAGTGGCGGTGATC 868 Query 72862 TCTGCTGCCAGAGTGTCCAATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACC 72921 || || ||||| ||||| | || || || || || || | || | || ||||| ||| Sbjct 867 TCAGCAGCCAGCGTGTCGAGCTCCACGGTGGTGACGCCGCTGTACAAACCCTGGATCACC 808 Query 72922 TTCATAGCTATTTTAATAGGATCTATATGATCAGTGTTTAAGCCATAACATAATTTTCTA 72981 ||||| | || | ||||| | | |||| ||| | || || || | || Sbjct 807 TTCATGGTGATCTGGGCCGGATCCACAAAGTCAGAGTTCAGTCCGTAGCACAGCTTCTGG 748 Query 72982 ATACGAGACGTGATTTTATCAAACATAAC 73010 || ||| | |||||||| || ||||| || Sbjct 747 ATGCGACAGGTGATTTTGTCGAACATGAC 719 >seq270369 Length=13262 Score = 93.3 bits (102), Expect = 6e-14 Identities = 120/166 (72%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 72761 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAA 72820 |||| || | ||| || || || ||||||||||| || || || || | || || || | Sbjct 9653 CACTGAACACTTTCTTGGTCTCTTTGTGTAGATTAGACACAGCAATCCGTGCAGCCAGGA 9712 Query 72821 TGGCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCTGCCAGAGTGTCCA 72880 ||||| || || |||| || || |||||||| | ||||||||||||||||||| Sbjct 9713 GAGCATAGTCAGGGTGTTTGGTGGTGAGGGTGGCTGCGGTCTCTGCTGCCAGAGTGTCCA 9772 Query 72881 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 72926 || || || || || ||| | || | || ||||| |||||||| Sbjct 9773 GCTCCACGGTGGTGACCCCACTGTACAGACCCTGGATCACCTTCAT 9818 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 668796655736320