Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20steindachneri_20[genbank_20GCA_5F001910785.1_202016-12- 20] 279,232 sequences; 648,011,071 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq200880 141 1e-29 seq146619 98.7 2e-16 >seq200880 Length=533 Score = 141 bits (156), Expect = 1e-29 Identities = 128/161 (80%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 ||||||||||| |||||||||||||| |||||||| ||||||||||| ||||| ||||| Sbjct 164 GATAACATCCAGGGAATCACCAAGCCCGCTATCCGCCGTCTGGCTCGCCGTGGAGGAGTG 105 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579 |||||| |||| | || |||| || |||| || ||| |||||| ||||||| || Sbjct 104 AAGCGTATCTCCAGTCTGATCTACGAGGAGACCCGCAGTGTGTTGAAGGTCTTCCTGGAG 45 Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAA 16620 | || |||| |||||| || ||| ||||||||||| || Sbjct 44 AATGTGATCCGTGATGCCGTCACCTACACCGAGCACGCCAA 4 >seq146619 Length=3725 Score = 98.7 bits (108), Expect = 2e-16 Identities = 122/167 (73%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 16508 CGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAG 16567 ||||| ||||| |||||| |||| || || |||| || |||| || | |||| | ||| Sbjct 3725 CGTGGCGGAGTGAAGCGTATCTCCGGTCTGATCTACGAGGAGACCCGCGGTGTTCTCAAG 3666 Query 16568 ATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAG 16627 | ||| | | | ||| |||| |||||| || ||| ||||||||||| ||| | ||| Sbjct 3665 GTGTTCTTGGAAAACGTGATCCGTGATGCCGTCACCTACACCGAGCACGCAAAAAGGAAG 3606 Query 16628 ACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCG 16674 ||||| ||| ||||||| | || || || |||| | || ||||| Sbjct 3605 ACTGTGACCGCCATGGACGTGGTGTACGCTCTGAAGAGGCAGGGCCG 3559 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 78819896227776