Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20steindachneri_20[genbank_20GCA_5F001910785.1_202016-12- 20] 279,232 sequences; 648,011,071 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq95031 199 4e-46 seq270369 118 1e-21 >seq95031 Length=3790 Score = 199 bits (220), Expect = 4e-46 Identities = 963/1511 (64%), Gaps = 48/1511 (3%) Strand=Plus/Minus Query 145058 TTGACGACCTGAAACTCGCCGGCCAACACACGACGCAAATACACGTTAGACGTGAAGGGT 145117 ||||||| ||||||||| |||| | || | || || | ||| ||| ||| | Sbjct 2595 TTGACGATCTGAAACTCTCCGGAGAGGACCCTGCGGGTGTAGATGTTGCTGGTGTAGGCT 2536 Query 145118 TCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCATGTACGCCACC 145177 || | |||||||| ||||||||||| || ||||| | || |||||||| |||| | Sbjct 2535 TCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGCATCGGGGCCAGC 2476 Query 145178 AATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTCCTTTAGCGTACCCCAATCCCAT 145237 | | || | || |||||| | ||| | ||||| ||| ||| ||| Sbjct 2475 AGCAGGCTGTTCCTCACGCCGTGGATGGCGATCTTCTCCTTCAGCAGCTTCCAGTCCAGC 2416 Query 145238 AGCGAAGTCGGCCTCACGTCCCACATGTCGTACTGCAAAATGCCCTCGCTGGCGGGGCTG 145297 || || ||| || ||||||||||||||||||| ||||||| |||| |||| | Sbjct 2415 AGTTCGGTGGGCTTCTTCTCCCACATGTCGTACTGCAGGATGCCCTTGCTGACGGGAGAG 2356 Query 145298 CCTTGAAAGGAACTGTAACTGCCCCAAGTTTTG--GCGAGCTCGCAACTCGCCTCCAGAG 145355 ||| | | ||| ||| || | | || |||||||| ||||||||||| | Sbjct 2355 CCTGCGTACGTCTCGTAGGGGCCG--AGCTCGGCGGCCAGCTCGCAGCTCGCCTCCAGGG 2298 Query 145356 CGCCGAAATAAATTGTCTCGGCAATTTGCCTGTTGAGCAGCATCGCTTCATCGCTCTCGT 145415 || || || || | |||| ||||| | || |||||| || || | ||| ||| Sbjct 2297 CGGCGTGGTAGATGGCCTCGAAGATTTGAATATTCAGCAGCTGAGCCTCTTTGCTTTCGA 2238 Query 145416 ACGGCATGCGCAGCAGTACAAAAGCATCGGCGAGCCCCTGTATTCCCACGCCGATGGGCC 145475 |||| |||| || | || ||||| || | || || | || | || || |||| Sbjct 2237 ACGGGTAACGCATGAGGATGAAGGCATCCGCCAAACCTTGGACGCCAATTCCAATCGGCC 2178 Query 145476 GATGTTTCATGTTG--CTCATCCTCGCCG---ACTCGATAGGATATCGATTACGGTCGAT 145530 || | ||||| || ||| | || ||| ||||| | | ||| ||||| Sbjct 2177 TGTGGCGCTTGTTGGACTTTTCCGCTTCGGGCACTGGATAGTAGTTA-ATT----TCGAT 2123 Query 145531 AATTTTATTCAAGTTTCGCACTACTACCTTTGTAATG--TGCCGCAACTTTTCAAAGTCA 145588 || || ||||| || || | ||| || || | |||| | |||| ||||||| Sbjct 2122 GATCTTGTTCAAATTCTTGACGATTACTTTGGTCACAGATGCC--AGTTTTTTAAAGTCA 2065 Query 145589 AA---CCGAGCCTCGTCAACGACCACACAGCTATTGACGGCGATCGACGCCAAATTACAA 145645 || ||| || | ||| || | |||| || || || |||| |||||| Sbjct 2064 AAAGTCCGCTCCGGGGTGACGTACA------TGTTGAGCGCAATTGAGGCCAGATTACAC 2011 Query 145646 ACTGCCGTCTCCTCGGCGTCGCTGTATTGTACGATCTCGGCGCACAAATTGCTACATTTG 145705 || || ||| ||| | | |||| | | ||| || | ||| | ||||| | ||| Sbjct 2010 ACCGCTACCTCATCGTGGCTGGTGTACTCGATGATTTCTGTGCAGAGGTTGCTGGACTTG 1951 Query 145706 ATGGTTCCCAGATTTTGCTGATTACTTTTCCTGTTGCACGCGTCCTTGTAGAGCATGTAC 145765 ||||| |||||||| || || || || ||||||||||| ||||| ||||| |||||||| Sbjct 1950 ATGGTGCCCAGATTCTGTTGGTTGCTCTTCCTGTTGCAGGCGTCTTTGTACAGCATGTAT 1891 Query 145766 GGTCCGCCAGTCTCCACCTGCGTCTCCACGATAAAACGGTG---CAAGTCCTGCGCACGC 145822 || ||||| || ||| | || |||||| ||| ||| | ||| || | Sbjct 1890 GGCGTACCAGTTTCTGTCTGGGACT---CGATAACGGCGTGCCACAACTGCTGAGCCTTC 1834 Query 145823 ACCTGCTGCTGGTAGCGGCCCT-CTTCTTCGTATTTCCTGTAGAGCTCCTCAAACGCGGA 145881 ||| ||| | | |||| |||| || || ||||||||| || ||| | Sbjct 1833 ACCACGCGCTTGAACTTCCCCTGCTTC-TCATAGGAGGTGTAGAGCTTTTCGAACTCCTC 1775 Query 145882 ACCGTAGCAATCGGACAGGCCGGGACACTTGTTGGGACACATCAGCGACCATACGCCGTT 145941 || |||| ||| || || || |||| ||||||||||||||| ||||| | |||| Sbjct 1774 CCCCCAGCACTCGTCCAACCCTGGGCACTCGTTGGGACACATCAGAGACCAGTCCTCGTT 1715 Query 145942 GGCGTTGACGCGCTCCATAAACAAATCTGGCACCCACAGCGCGTACATCAAGTCGC--GC 145999 | | || | || ||| |||| || || | |||||| |||| | | ||| | || Sbjct 1714 GCTCTCCACTCTCTTCATGAACAGGTCGGGGATCCACAGGCCGTAGAAAAGGTCCCTGGC 1655 Query 146000 GCTTTGCAATCCTCAGCACCCATGTTTCGCTTCAAATTAAGCACACTATAGATGTCCGCG 146059 || ||| ||||| || |||| ||| | | || | | | | ||| ||| Sbjct 1654 TCTCTGC--TCCTCCTTTCCGGTGTTCTTCTTTAGCTCCAGGAAGTCAAACACGTCGGCG 1597 Query 146060 TGCCACGGTTCAATATAGACGGCGAGGGCTCCT--TTTCGT-TTGCCACCCTGGTCCACG 146116 ||||| || || | || | ||||| ||||||| | || | ||||| |||||||| ||| Sbjct 1596 TGCCAGGGCTCCAGGTACATGGCGAAGGCTCCTGGTCTCTTGTTGCCGCCCTGGTCGACG 1537 Query 146117 TGACGTACCATGTTGTTAAAGACGCGCACCATGGGCTCGACGCCGCTGGCTACGCCGTTC 146176 | |||| || ||||||| | || | || |||||| |||| ||| ||| |||||| Sbjct 1536 TAACGTGCCGTGTTGTTGTAAACTCTCAGCATGGGGACGACCCCGTTGGAGTTGCCGTTG 1477 Query 146177 GTAGAGTTTATTCTGGTGCCGCGGGAGCGCACGCAATGAACATTCACGCCGAGACCGCCG 146236 || | || | | || | | | ||| | ||| || | || ||| Sbjct 1476 GTGCCGGCGATGTAGCTCCCCGTTGTTCTGATGCAGCTTATCGCCACACCAATTCCCCCG 1417 Query 146237 CCGTACTTGGATATAGCGGCGCAGTCGCCGAGCGTCTCGTAGATGCCGTCAATGCTATCG 146296 | | ||||| || |||||| | ||||| ||||| ||||| || ||||| ||| Sbjct 1416 GCTGATTTGGAGATGAGGGCGCATTGCTTCAGCGTGTCGTAAATGCCTTCGATGCTGTCG 1357 Query 146297 CTTCGAATGCCGAGCAGAAAGCACGAGCACATCTGCGCCATCGGCGTCCCCGCCGAGAAC 146356 | ||| ||||||| ||||| | ||| ||| | | | || || || ||| Sbjct 1356 TCTTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGTGGCCTGTTGGTTCCTGCGTTGAAG 1297 Query 146357 AACGTCGGGCTCGCGTGCGT-AAACATTTTTCGGCTCATCATCCGATACGTTTCGATAGC 146415 | ||| ||| ||||| || || || || || | || || ||||| || || || Sbjct 1296 AGCGTGGGGGAGGCGTGGGTGAACCACTTCTCTG-ACAGCAGGTTGTACGTCTCAATGGC 1238 Query 146416 GTCTTGAATGTCGTCGCCATGAATGCCCAAAGCGACGCGCATGAGCATGTGTTGGGGCCG 146475 | | ||||| || || || | | || | |||||||||||| || || || Sbjct 1237 TGCGTCGATGTCCATCTTGTGGATCCCGACGGACACTCTCATGAGCATGTGCTGCGGTCG 1178 Query 146476 CTCCGCCACTTGATTGTCAATCTTTAACAAATAG--CCGTTCTCCAGGGTTTTGTATCCG 146533 ||| ||||||| || ||||| |||| ||| ||| |||||| || ||| | ||| Sbjct 1177 CTCGGCCACTTTGCCGTTGATCTTCAACAGGTAGGACCG--CTCCAGAGTCTTGAAGCCG 1120 Query 146534 AAAAATTTGTA 146544 || || ||||| Sbjct 1119 AAGAAGTTGTA 1109 >seq270369 Length=13262 Score = 118 bits (130), Expect = 1e-21 Identities = 86/100 (86%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 145668 TGTATTGTACGATCTCGGCGCACAAATTGCTACATTTGATGGTTCCCAGATTTTGCTGAT 145727 |||| | ||||||||| | ||||| |||||| |||||||||| |||||||| ||||| | Sbjct 6569 TGTACTCTACGATCTCCGTGCACAGATTGCTGGATTTGATGGTGCCCAGATTCTGCTGGT 6628 Query 145728 TACTTTTCCTGTTGCACGCGTCCTTGTAGAGCATGTACGG 145767 | || ||||||||||| |||||||||||||||||||| || Sbjct 6629 TGCTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTATGG 6668 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 470365286522880