Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20steindachneri_20[genbank_20GCA_5F001910785.1_202016-12- 20] 279,232 sequences; 648,011,071 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq118823 122 6e-23 seq12541 95.1 8e-15 seq191274 91.5 1e-13 seq150036 84.2 1e-11 >seq118823 Length=6831 Score = 122 bits (134), Expect = 6e-23 Identities = 130/172 (76%), Gaps = 0/172 (0%) Strand=Plus/Minus Query 6319 ACCCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAAAAACG 6378 ||||||| || | ||| || || ||||| || |||||||| ||||||||| |||||||| Sbjct 978 ACCCGACCAAGTTTTTTGGTTGTGAACTCGGTGCTCAGACCCAGTTTGATAGCAAAAACG 919 Query 6379 AGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGACGGCT 6438 | || | |||||| |||||||| || | | |||| |||||||| | ||||| || | Sbjct 918 ACCGTTACATCGTCAACGGATCCCACGAGGCGAACAAGTTGCAGGACATGCTTGATGGGT 859 Query 6439 TTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCGAGCT 6490 | || | || ||||||||||||| || || || ||||| || || || || Sbjct 858 TCATCAGAAAATTTGTGCTGTGTCCCGAGTGTGACAACCCTGAAACTGATCT 807 >seq12541 Length=12852 Score = 95.1 bits (104), Expect = 8e-15 Identities = 78/95 (82%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||||||||| ||||| || ||| | || Sbjct 9496 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGCCAGTAGGGACAGTGGGAATATTGT 9437 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | | || |||||| |||||||||||||||||| || Sbjct 9436 TCAACCATTCATGTGCGTCACTAATTAGATGAAGA 9402 >seq191274 Length=5008 Score = 91.5 bits (100), Expect = 1e-13 Identities = 67/78 (86%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||||||||||||||| | ||||||||| |||||||||||| Sbjct 251 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTAAGGTACTTGTCAACTATCGGTCTCGT 192 Query 20007 GGTAATATTTAGCCTTAT 20024 | |||||||||| || Sbjct 191 GCCGGTATTTAGCCTAAT 174 >seq150036 Length=5447 Score = 84.2 bits (92), Expect = 1e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 19948 TCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGCG 20007 ||||||||||||||||||||||||||||||| | |||||||| |||||||||| | | Sbjct 88 TCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTAAAGTACTTGTCGACTATCGGTCTGGTG 29 Query 20008 GTAATATTTAGCCTTA 20023 |||||||||||| Sbjct 28 CCGGTATTTAGCCTTA 13 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 333807327785792