Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20steindachneri_20[genbank_20GCA_5F001910785.1_202016-12- 20] 279,232 sequences; 648,011,071 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq95031 102 2e-16 seq215776 87.8 4e-12 seq34543 86.0 1e-11 >seq95031 Length=3790 Score = 102 bits (112), Expect = 2e-16 Identities = 213/315 (68%), Gaps = 2/315 (1%) Strand=Plus/Minus Query 293919 GGTGTACTCGACAATCTCAGCACAGAGGTTACTGCCCTTGATGGTGCCCGCATTAGACTG 293978 ||||||||||| || || | |||||||| ||| ||||||||||||| ||| || Sbjct 1990 GGTGTACTCGATGATTTCTGTGCAGAGGTTGCTGGACTTGATGGTGCCCAGATTCTGTTG 1931 Query 293979 CATGTTCTTGGCATTGACACTGTCTTTGTTGAGGACATATGGCATACCCGTTTCAATCTG 294038 || |||| ||| |||||||| || | |||||| |||| ||||| |||| Sbjct 1930 GTTGCTCTTCCTGTTGCAGGCGTCTTTGTACAGCATGTATGGCGTACCAGTTTCTGTCTG 1871 Query 294039 AGTGGTGACCATGGTGTTCCAGACATCGCGAGCCTTCACCACGCGCTTTGCCTTCCCCTC 294098 | || | || || ||| | | ||||||||||||||||||| |||||||| Sbjct 1870 GGACTCGATAACGGCGTGCCACAACTGCTGAGCCTTCACCACGCGCTTGAACTTCCCCTG 1811 Query 294099 AGACTCATACTTGGTGTAAAGCTCTTCGTATTCCTTGCCATATACATCAGACAGGCCAGG 294158 |||||| |||||| |||| |||| | |||| || | || || || || Sbjct 1810 CTTCTCATAGGAGGTGTAGAGCTTTTCGAACTCCTCCCCCCAGCACTCGTCCAACCCTGG 1751 Query 294159 GCACTCGTGAGGGTCA-AGTAGAGACCACTGGGCATCAGTCTCCACGCGCTTCATGAATA 294217 |||||||| ||| || | |||||||| | | | ||||||| | ||||||||| | Sbjct 1750 GCACTCGT-TGGGACACATCAGAGACCAGTCCTCGTTGCTCTCCACTCTCTTCATGAACA 1692 Query 294218 GATCATTGACCCACA 294232 | || || ||||| Sbjct 1691 GGTCGGGGATCCACA 1677 >seq215776 Length=1831 Score = 87.8 bits (96), Expect = 4e-12 Identities = 67/77 (87%), Gaps = 2/77 (3%) Strand=Plus/Minus Query 142048 CGCATGTCTCTGTGGCGCAATGGAC-AGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGT 142106 |||| ||||||||||||||||||| |||||| ||||||||||||||| ||| | ||||| Sbjct 1353 CGCA-GTCTCTGTGGCGCAATGGAATAGCGCGCTGGACTTCTAATCCAGAGGCTCCGGGT 1295 Query 142107 TCGACCCCCGCCAGAGA 142123 |||| |||| |||||| Sbjct 1294 TCGAGTCCCGGCAGAGA 1278 >seq34543 Length=8080 Score = 86.0 bits (94), Expect = 1e-11 Identities = 63/72 (88%), Gaps = 1/72 (1%) Strand=Plus/Plus Query 142053 GTCTCTGTGGCGCAATGGAC-AGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTCGAC 142111 ||||||||||||||||||| |||||| ||||||||||||||| ||| | ||||||||| Sbjct 6438 GTCTCTGTGGCGCAATGGAATAGCGCGCTGGACTTCTAATCCAGAGGCTCCGGGTTCGAG 6497 Query 142112 CCCCGCCAGAGA 142123 |||| |||||| Sbjct 6498 TCCCGGCAGAGA 6509 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1024159549394112