Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20steindachneri_20[genbank_20GCA_5F001910785.1_202016-12- 20] 279,232 sequences; 648,011,071 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq234594 120 6e-22 seq147431 84.2 4e-11 >seq234594 Length=1052 Score = 120 bits (132), Expect = 6e-22 Identities = 109/135 (81%), Gaps = 2/135 (1%) Strand=Plus/Minus Query 68328 AATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACG 68387 || || || || || ||||| || ||||||||||||||||| || ||||| || || ||| Sbjct 191 AAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCTTTCACG 132 Query 68388 GCCTCGATGGTGTCTGCTGA-TTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTT 68446 ||| |||||||| |||| ||| || |||| ||||||||| || || ||||||||||| Sbjct 131 TTCTCAATGGTGTC-GCTGGGTTCAACCTCCAGGGTGATGGTCTTGCCAGTGAGGGTCTT 73 Query 68447 GACGAATATCTGCAT 68461 ||||| |||||||| Sbjct 72 AACGAAGATCTGCAT 58 >seq147431 Length=1964 Score = 84.2 bits (92), Expect = 4e-11 Identities = 83/105 (79%), Gaps = 2/105 (2%) Strand=Plus/Minus Query 68358 CCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGAT-TCTACTTC 68416 ||||||||||| || ||||| ||||| ||| ||| |||||||| |||| || || || Sbjct 1721 CCTTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTC-GCTGGGCTCGACCTC 1663 Query 68417 CAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 | |||||||| || || ||||||||||| || || |||||||| Sbjct 1662 AAGAGTGATGGTCTTGCCAGTGAGGGTCTTCACAAAGATCTGCAT 1618 Score = 84.2 bits (92), Expect = 4e-11 Identities = 104/147 (71%), Gaps = 2/147 (1%) Strand=Plus/Minus Query 68315 CTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAAT 68374 |||||| || || || || || || || ||||| || |||||||||||||| || || || Sbjct 1962 CTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCCTTATCCTGGAT 1903 Query 68375 CTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCC 68434 ||| ||||| || ||| ||| |||| ||||||||| || || Sbjct 1902 CTTGGCCTTAACATTCTCAATG--NNNNNNNNNNNNNNNNTCCAGGGTGATGGTCTTGCC 1845 Query 68435 CGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||||||||| ||||| |||||||| Sbjct 1844 AGTGAGGGTCTTAACGAAGATCTGCAT 1818 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 918405569175040