Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20steindachneri_20[genbank_20GCA_5F001910785.1_202016-12- 20] 279,232 sequences; 648,011,071 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq95031 477 2e-129 seq270369 113 8e-20 seq69271 87.8 3e-12 seq25939 86.0 1e-11 >seq95031 Length=3790 Score = 477 bits (528), Expect = 2e-129 Identities = 1085/1602 (68%), Gaps = 60/1602 (4%) Strand=Plus/Minus Query 244010 GAGCCCTTGTGGACGATGAGCTGGGTGCGCATGTTATCGTTCCACAGGCCCAAGCGCTCC 244069 || || ||||| |||| |||||| | ||| | ||| ||||||| || | |||| Sbjct 2676 GACCCGTTGTGAGCGATCAGCTGGTTCTTCATCTCCTCGCTCCACAGCCCT---CTCTCC 2620 Query 244070 ---AGCGCCTCGACCAGGTGCCTGTTCACCACCTGAAACTCTCCCGACAGCACGCGGCGC 244126 || | | || ||| || ||| || | |||||||||||| || || || | ||| Sbjct 2619 GTCAGGTCTTTGAGCAGATGAGGGTTGACGATCTGAAACTCTCCGGAGAGGACCCTGCGG 2560 Query 244127 TGGTAGAGGTTGCTGCTGAGCGGCTCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTG 244186 ||||| ||||||| || | |||||| ||| |||||||||| ||||| || ||| Sbjct 2559 GTGTAGATGTTGCTGGTGTAGGCTTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTG 2500 Query 244187 CTCGCAGTCGGCATGGGCGACACCAGCAGACTGTTCCTCACGCCGTGCCTCTGGATGCGG 244246 || || ||||| || | || |||||| ||||||||||||||||| |||| | Sbjct 2499 GAGGCCGTGGGCATCGGGGCCAGCAGCAGGCTGTTCCTCACGCCGTG------GATGGCG 2446 Query 244247 AGTCTGAGCTCGTTC--CAG-TCCCACATGCCCGAGAGGTCCTCGCGTTTGAGGCCCCAC 244303 | ||| ||| ||| ||| | ||| | || || || | | || ||||| Sbjct 2445 A-TCTT--CTCCTTCAGCAGCTTCCA---GTCCAGCAGTTCGGTGGGCTTCTTCTCCCAC 2392 Query 244304 ATGTCAAACTGCAGCAGCCCCTTGCTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCG 244363 ||||| ||||||| | |||||||||||||| ||| |||| ||| |||||| ||| Sbjct 2391 ATGTCGTACTGCAGGATGCCCTTGCTGACGGGAGAGCCTGCGTACGTCTCGTAGGGGCCG 2332 Query 244364 TCGCGCTG-GGCCAGCTTACAGCTCTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGAT 244422 || | | |||||||| |||||| | || |||||||||| |||||||| ||||||||| Sbjct 2331 A-GCTCGGCGGCCAGCTCGCAGCTCGCCTCCAGGGCGGCGTGGTAGATGGCCTCGAAGAT 2273 Query 244423 CATCTTGTTCATGTCGCGG-GCCTTGCCGCAGGTGAAGGGGATGCCCATCATCATGAAGA 244481 | |||| | || | |||| || ||| ||| | ||| | |||||| Sbjct 2272 TTGAATATTCA-GCAGCTGAGCCTCTTTGCTTTCGAACGGGTAACGCATGAGGATGAAGG 2214 Query 244482 CGTCGGCCAGTCCCTGCACGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGAGCGCATGG 244541 | || |||| || || ||||| || || || || ||||| ||||||||||| | Sbjct 2213 CATCCGCCAAACCTTGGACGCCAATTCCAATCGGCCTGTGGCGCTTGTTGGACTTTTCCG 2154 Query 244542 CTTCGGGCACGGGGTAAAAGTTGCCGTCGATCACCTTGTTGAGGTTGCGGGTGATCA-TG 244600 |||||||||| || || |||| ||||| | |||||| | || | ||| | | Sbjct 2153 CTTCGGGCACTGGATAGTAGTTAATTTCGATGATCTTGTTCAAATTCTTGACGATTACTT 2094 Query 244601 CGGACGACGTCGGCCAGCAGCTGAAAGTCGTACTCGTAGGGATCCTCGGCGATGGTGATC 244660 || | || ||||| | |||||| | || ||| | || ||||| Sbjct 2093 TGGTC-ACAGATGCCAGTTTTTTAAAGTCAAA-----AG---TCCGCTCCGG-GGTGA-- 2046 Query 244661 CTCACAAACTCGTTGAGGGCGACGCTGGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTG 244720 | || |||||| || | |||||| || || || || ||||| || | || Sbjct 2045 ----CGTACATGTTGAGCGCAATTGAGGCCAGATTACACACCGCTACCTCATCGTGGCTG 1990 Query 244721 GTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGA 244780 ||||||| || || || ||||||||||| ||| |||||||||||||||| | ||| || Sbjct 1989 GTGTACTCGATGATTTCTGTGCAGAGGTTGCTGGACTTGATGGTGCCCAGATTCTGTTGG 1930 Query 244781 TTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGG 244840 ||| ||| |||||||||||| ||||| |||||| | ||| || || || |||| Sbjct 1929 TTGCTCTTCCTGTTGCAGGCGTCTTTGTACAGCATGTATGGCGTACCAGTTTCTGTCTGG 1870 Query 244841 GCGACGAGGACGCTGTTCCAGAGGTCCCTAGCCTTGACCGTCCTGCGAGC-CTTGCCCTC 244899 | ||| ||| || ||| | | | |||||| ||| | || | ||| |||| Sbjct 1869 GACTCGATAACGGCGTGCCACAACTGCTGAGCCTTCACCACGC-GCTTGAACTTCCCCTG 1811 Query 244900 TGCCTCGTAGCGGGTGTACAGGGCCTCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGG 244959 ||| ||| |||||| || |||||||| |||||| |||||| | || || Sbjct 1810 CTTCTCATAGGAGGTGTAGAGCTTTTCGAACTCCTCCCCCCAGCACTCGTCCAACCCTGG 1751 Query 244960 GCACGACGCCGGG-CACATGAGACTCCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGA 245018 |||| || ||| ||||| ||| ||| || || | || || |||| |||||| | Sbjct 1750 GCACT-CGTTGGGACACATCAGAGACCAGTCCTCGTTGCTCTCCACTCTCTTCATGAACA 1692 Query 245019 GGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGT 245078 ||||||||||||| ||| | | ||| |||||||||| |||||||| ||| || |||| Sbjct 1691 GGTCGGGGATCCACAGGCCGTAGAAAAGGTCCCTGGCTCTCTGCTCCTCCTTTCCGGTGT 1632 Query 245079 TCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGA 245138 ||||| | ||||||| |||||||| |||||| ||||||||||||||| ||| | |||| Sbjct 1631 TCTTCTTTAGCTCCAGGAAGTCAAACACGTCGGCGTGCCAGGGCTCCAGGTACATGGCGA 1572 Query 245139 GGGCGCCGGGCCGCTTGTTGCCTCCCTGGTCCAC-CATCCTCTCGAGCGCGTTGAAGATG 245197 ||| || || | ||||||||| |||||||| || | | | || | |||| | | Sbjct 1571 AGGCTCCTGGTCTCTTGTTGCCGCCCTGGTCGACGTAACGTGCCGTG-TTGTTGTAAACT 1513 Query 245198 CGCAGGGTAGGCACTATGCCGTTAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTG 245257 | ||| | || || | ||||| |||| |||||||||||| ||||||| ||| | Sbjct 1512 CTCAGCATGGGGACGACCCCGTTGGAGTTGCCGTTGGTGCCGGCGATGTAGCTCCCCGTT 1453 Query 245258 CCCCTGAGGTTGCTGATGGACATGCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAG 245317 |||| | ||| || | || || | ||| ||||| ||||||||||||||||| Sbjct 1452 GTTCTGATGCAGCTTATCGCCACACCAATTCCCCCGGCTGATTTGGAGATGAGGGCGCAT 1393 Query 245318 CTCTTGATGGTGTCTGCTATGCCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAG 245377 ||| | ||||| ||||| || |||||||| |||||| |||||| |||||| Sbjct 1392 TGCTTCAGCGTGTCGTAAATGCCTTCGATGCTGTCGTCTTTCATGGCGAGCAGGAAGCAG 1333 Query 245378 GAGGACAGCTGGGGCTTGGGGCTGCACGAGTTGAACAGAGTGGGGCTGGCGTGGGTAAAG 245437 ||||||||| ||| || | | | | |||||| || |||||| ||||||||| || Sbjct 1332 CTGGACAGCTGTGGCCTGTTGGTTCCTGCGTTGAAGAGCGTGGGGGAGGCGTGGGTGAAC 1273 Query 245438 TAGCGGCTC-GAGAGGAACCCGTACGTCTGGAGCAGAGCGTCGATGTTGTCGCCGTGGAT 245496 | | ||| || || | |||||||| | |||||||||| |||||| Sbjct 1272 CA-CTTCTCTGACAGCAGGTTGTACGTCTCAATGGCTGCGTCGATGTCCATCTTGTGGAT 1214 Query 245497 CTGCAGGGCGCAC-CTCATGAGGGTGTGCTGGGGCGTCTCGATGGGTCCCT----CGGGT 245551 | | || ||| |||||||| ||||||| || ||| | || | || || Sbjct 1213 CCCGACGG-ACACTCTCATGAGCATGTGCTGCGG----TCGCTCGGCCACTTTGCCGTTG 1159 Query 245552 CCCTTGAGCATGTAGGAGCGCTCGAGCGTCTTGAACCCAAAG 245593 ||| | || |||||| ||||| || |||||||| || ||| Sbjct 1158 ATCTTCAACAGGTAGGACCGCTCCAGAGTCTTGAAGCCGAAG 1117 >seq270369 Length=13262 Score = 113 bits (124), Expect = 8e-20 Identities = 109/140 (78%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 244097 ACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCTCGATG 244156 ||||||||||||||||| ||||| | ||| ||||| ||||||| || | ||| ||| Sbjct 5603 ACCTGAAACTCTCCCGAGAGCACCCTGCGGGTGTAGATGTTGCTGGTGTAAGCCTCAATG 5662 Query 244157 CTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACCAGCAGA 244216 ||| |||||||||| ||||| || ||| || || |||||||| | || |||||| Sbjct 5663 GACTCGTTGTTGCCCAGGATCTGTGCGGTGGAAGCTGTGGGCATGGGGGCCAAGAGCAGA 5722 Query 244217 CTGTTCCTCACGCCGTGCCT 244236 ||||||||||| || ||||| Sbjct 5723 CTGTTCCTCACACCATGCCT 5742 Score = 98.7 bits (108), Expect = 2e-15 Identities = 90/114 (79%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 244721 GTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGA 244780 ||||||| || ||||| ||||| || || ||| | |||||||||||||| | ||| || Sbjct 6568 GTGTACTCTACGATCTCCGTGCACAGATTGCTGGATTTGATGGTGCCCAGATTCTGCTGG 6627 Query 244781 TTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCG 244834 ||| ||| ||||||||||||||||||||||||| | ||| ||||| ||| Sbjct 6628 TTGCTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTATGGCGTGCCGGTTTCG 6681 >seq69271 Length=468 Score = 87.8 bits (96), Expect = 3e-12 Identities = 99/140 (71%), Gaps = 14/140 (10%) Strand=Plus/Plus Query 42706 TGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCT 42765 |||| |||||| ||||||| ||||| ||||||||||| || |||||||||||||||||| Sbjct 70 TGGTGGCCTTTGCCGCCGTGGAGGGAATCTTCTTCTCTGGTTCCTTCGCCTCCATCTTCT 129 Query 42766 GGCTCAAGCAGAAGGTGTCG--------------ATGCCCGGACTCACCTTCTCGAACGA 42811 |||| || |||||||| || |||||||| ||||| Sbjct 130 GGCTGAANNNNNNNNNNNNNNNNNNNNNNNNNNAATGCCCGGCCTGACCTTCTCCAACGA 189 Query 42812 ACTCATCAGCAGGGACGAGG 42831 || |||||||| ||||||| Sbjct 190 GCTAATCAGCAGAGACGAGG 209 >seq25939 Length=11470 Score = 86.0 bits (94), Expect = 1e-11 Identities = 82/105 (78%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 242955 GACAGGACCACTCCGATCGGACAGATGATCAACTCGTACCTGCTCAACAAGAGCGATCTG 243014 ||||||||||| | || |||||| |||||| | | |||||| || ||||| || ||| Sbjct 10993 GACAGGACCACGACTATTGGACAGCTGATCAGCGCTTACCTGGAGAAGAAGAGTGACCTG 10934 Query 243015 GACGATCACGTCGTACACCTCCTGTTCTCGGCCAACCGATGGGAA 243059 || || ||| || ||||| |||||||| || |||||||||||| Sbjct 10933 GAGGACCACACAGTGCACCTGCTGTTCTCTGCAAACCGATGGGAA 10889 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 941043078456320