Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20steindachneri_20[genbank_20GCA_5F001910785.1_202016-12- 20] 279,232 sequences; 648,011,071 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq148584 105 2e-17 seq234594 95.1 3e-14 >seq148584 Length=286 Score = 105 bits (116), Expect = 2e-17 Identities = 108/140 (77%), Gaps = 6/140 (4%) Strand=Plus/Minus Query 288328 TGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG---GATTCCTTCTTTATCCTGG 288384 || ||||| || |||||||||||||| || ||||| ||| || ||||| |||||| Sbjct 137 TGCTTTCCAGCAAAGATCAGACGCTGCTGG---TCTGGAGGGATGCCCTCTTTGTCCTGG 81 Query 288385 ATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTC 288444 ||||| || || |||||||| || ||||| || | || || || || ||||| ||||| Sbjct 80 ATTTTAGCCTTGACGTTTTCAATGGAATCACTGGGCTCCACCTCCAGGGTGATGGTCTTT 21 Query 288445 CCGGTCAGAGTCTTGACGAA 288464 || ||||| ||||| ||||| Sbjct 20 CCAGTCAGGGTCTTCACGAA 1 >seq234594 Length=1052 Score = 95.1 bits (104), Expect = 3e-14 Identities = 104/137 (76%), Gaps = 6/137 (4%) Strand=Plus/Minus Query 288340 AAGATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTC 288396 |||||||| | ||| || |||||| || ||||| || |||||||| || |||||| Sbjct 191 AAGATCAGCCTCTGCTGG---TCTGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCTTTC 135 Query 288397 ACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTC 288456 ||||| || || | ||||| | ||| || || || ||||| ||||| || || || ||| Sbjct 134 ACGTTCTCAATGGTGTCGCTGGGTTCAACCTCCAGGGTGATGGTCTTGCCAGTGAGGGTC 75 Query 288457 TTGACGAATATCTGCAT 288473 || ||||| |||||||| Sbjct 74 TTAACGAAGATCTGCAT 58 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1175433997639296