Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20steindachneri_20[genbank_20GCA_5F001910785.1_202016-12- 20] 279,232 sequences; 648,011,071 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq95031 174 2e-38 seq270369 89.7 6e-13 >seq95031 Length=3790 Score = 174 bits (192), Expect = 2e-38 Identities = 831/1300 (64%), Gaps = 32/1300 (2%) Strand=Plus/Minus Query 113942 TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCGGTGGAG 114001 ||||| ||| | ||||| | || | | |||| ||||| |||| ||| |||||||||||| Sbjct 2556 TAGATGTTGCTGGTGTAGGCTTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAG 2497 Query 114002 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCC 114061 || |||||||| || |||| || |||||||| | | || | || ||| Sbjct 2496 GCCGTGGGCATCGGGGCCAGCAGCAGGCTGTTCCTCACGCCGTGGATGGCGATCTTCTCC 2437 Query 114062 TTGAGGGCGTCCCAGTC--GTAGTTGAGCTTTGTCTCCCCCTGCCACATATCAAACTGGA 114119 || || | |||||| | |||| | | | || | || |||||| || |||| | Sbjct 2436 TTCAGCAGCTTCCAGTCCAGCAGTTCGG--TGGGCTTCTTCTCCCACATGTCGTACTGCA 2379 Query 114120 GGATACCTTGGGAGGCTGGCGATCCCTCAAATGTCTCGTATGGGCCCTCAACCTCCGCCA 114179 |||| || | | | | || || || | | |||||||| ||||| | | |||| Sbjct 2378 GGATGCCCTTGCTGACGGGAGAGCCTGCGTACGTCTCGTAGGGGCCGAGCTCGGCGGCCA 2319 Query 114180 ATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATTG 114239 ||| |||||||||| ||||| ||||| || || | ||| || || || ||||| Sbjct 2318 GCTCGCAGCTCGCCTCCAGGGCGGCGTGGTAGATGGCCTCGAAGATTTGAATATTCAGCA 2259 Query 114240 CCTTGGCCTCGTCGGAATCAAACGCGAGTCGGCACAAAATAAATACATCCGCGAGACCTT 114299 || ||||| | | || |||| | || | || || ||||||| | ||||| Sbjct 2258 GCTGAGCCTCTTTGCTTTCGAACGGGTAACGCATGAGGATGAAGGCATCCGCCAAACCTT 2199 Query 114300 GGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCCACGGGAT 114359 |||| || | ||||| || | || | | | || |||||| || ||| |||| Sbjct 2198 GGACGCCAATTCCAATCGGCCTGTGGCGCTTGTTGGACTTTTCCGCTTCGGGCACTGGAT 2139 Query 114360 AAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGA- 114418 | | || | ||||| | | | || | ||| ||| || || || || | ||| Sbjct 2138 AGTAGTTAATTTCGATGATCTTGTTCAAATTCTTGACGATTACTTTGGTCACAG-ATGCC 2080 Query 114419 AGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGAC 114478 || |||| | |||||| | || ||| |||| ||| | || || ||||| Sbjct 2079 AGTTTTTTAAAGTCAAAAGTCCG---CTCCGGGGTGACGTACATGTTGAGCGCAATTGAG 2023 Query 114479 GCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAA 114538 |||||||||||||| | |||||| | |||||||| || ||||| || || | Sbjct 2022 GCCAGATTACACACCGCTACCTCATCGTGGCTGGTGTACTCGATGATTTCTGTGCAGAGG 1963 Query 114539 TT--TGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCT 114596 || || ||| | |||||||||| |||| ||| || ||| |||| || || || | Sbjct 1962 TTGCTGGACT--TGATGGTGCCCAGATTCTGTTGGTTGCTCTTCCTGTTGCAGGCGTCTT 1905 Query 114597 TGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCA-GACA 114655 |||| |||||||||||||| || || || || ||||||| || || || | ||| || Sbjct 1904 TGTACAGCATGTATGGCGTACCAGTTTCTGTCTGGGACTCGATAACGGCGTGCCACAACT 1845 Query 114656 TCGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTAGAGGGCT 114715 | | | || ||| | ||| ||||| || ||| || |||||||| | Sbjct 1844 GCTGAGCCT-TCACCACGCGCTTGAACTTCCCCTGCTTCTCATAGGAGGTGTAGAGCTTT 1786 Query 114716 TCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAGAGAC 114775 || ||||| || ||| | ||| | |||||| || | || || | |||||| Sbjct 1785 TCGAACTCCTCCCCCCAGCACTCGTCCAACCCTGGGCACTCGTTGGGACACATCAGAGAC 1726 Query 114776 CATTGACCACCCT--CCTCAACACGCTTCATGAAGAGGTCTGGGATCCAGAGAGCTGAGA 114833 || | || | | ||| || | ||||||||| ||||| |||||||| || | ||| Sbjct 1725 CA--GTCCTCGTTGCTCTCCACTCTCTTCATGAACAGGTCGGGGATCCACAGGCCGTAGA 1668 Query 114834 AGAGATCCC-GACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCC 114892 | || |||| | | ||| || | | || || || | ||||| ||||| Sbjct 1667 AAAGGTCCCTGGCTCTCTGCTCCTCCTTTCCGGTG-TTCTTCTTTAGCTCCAGGAAGTCA 1609 Query 114893 ATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCC----CTTACGACGACC 114948 | | || |||||||| || |||||||||| |||| | || || | | || Sbjct 1608 AACACGTCGGCGTGCCAGGGCTCCAGGTACATGGCGAAGGCTCCTGGTCTCTTGTTG-CC 1550 Query 114949 AGCCTGGTTTACATACCTCGCTGTGGCATTAAATACGCGAAGCATTGGAATGATACCATC 115008 |||||| || || | || ||| || | || | ||||| || | || || | Sbjct 1549 GCCCTGGTCGACGTAACGTGCCGTGTTGTTGTAAACTCTCAGCATGGGGACGACCCCGTT 1490 Query 115009 AGATTGGCCATTTGT-CCCCCGAATACGAGACTTATTGGCTCTGA--CATCATGGATGTG 115065 || | ||| || || || ||| | | || | ||||| || | | || Sbjct 1489 GGAGTTGCCGTTGGTGCCGGCGATGTAGCTCCCCGTT-GTTCTGATGCAGCTT--ATCGC 1433 Query 115066 CATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGAT 115125 || |||||| ||||| || | || ||||| | ||||| | | | || || |||| || Sbjct 1432 CACACCAATTCCCCCGGCTGATTTGGAGATGAGGGCGCATTGCTTCAGCGTGTCGTAAAT 1373 Query 115126 CCCGTCGATCGAGTCACCCTTATTTGCGATAAGGAAGCAGCTCGACATTTGTGGCCTTGG 115185 || ||||| ||| | || | |||| ||||||||||| |||| |||||||| Sbjct 1372 GCCTTCGATGCTGTCGTCTTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGTGGCCTGTT 1313 Query 115186 TGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAAC 115225 || || ||||||||||| || || | |||||| ||||| Sbjct 1312 GGTTCCTGCGTTGAAGAGCGTGGGGGAGGCGTGGGTGAAC 1273 >seq270369 Length=13262 Score = 89.7 bits (98), Expect = 6e-13 Identities = 75/92 (82%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 113942 TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCGGTGGAG 114001 ||||| ||| | ||||| | ||||| | |||| ||||| |||| ||| || |||||||| Sbjct 5636 TAGATGTTGCTGGTGTAAGCCTCAATGGACTCGTTGTTGCCCAGGATCTGTGCGGTGGAA 5695 Query 114002 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTT 114033 |||||||||||||| |||| ||| || ||||| Sbjct 5696 GCTGTGGGCATGGGGGCCAAGAGCAGACTGTT 5727 Score = 82.4 bits (90), Expect = 9e-11 Identities = 114/158 (72%), Gaps = 4/158 (3%) Strand=Plus/Plus Query 114499 CTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATT--TGAACTCTTAATGGTG 114556 |||||| ||| |||||||||| || ||||| |||| ||| || | | | |||||| Sbjct 6555 CTCATCTTTACTTGTGTACTCTACGATCTCCGTGCACAGATTGCTGGATT--TGATGGTG 6612 Query 114557 CCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTC 114616 |||| |||| || || ||| |||| || || |||||||| |||||||||||||| Sbjct 6613 CCCAGATTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTATGGCGTG 6672 Query 114617 CCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGAC 114654 || || || || || || | || || || | ||| || Sbjct 6673 CCGGTTTCGGTCTGCGATTCGATGATGGCGTACCACAC 6710 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595268596994560