Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20steindachneri_20[genbank_20GCA_5F001910785.1_202016-12- 20] 279,232 sequences; 648,011,071 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq95031 223 3e-53 seq270369 95.1 1e-14 >seq95031 Length=3790 Score = 223 bits (246), Expect = 3e-53 Identities = 1029/1608 (64%), Gaps = 51/1608 (3%) Strand=Plus/Plus Query 93718 TACGATTACTTTGCCTTCAAAACTCTGGAGAAGTCGTACCTCCTCAAGATGGATGGCAGG 93777 ||| | | ||| | |||||| ||||||||| ||| ||||| | ||||| | |||| Sbjct 1109 TACAACTTCTTCGGCTTCAAGACTCTGGAGCGGTCCTACCTGTTGAAGATCAACGGCAAA 1168 Query 93778 GTTTCCGAGCGACCGCACCAGCTGCTGATGCGCGTCGCCATCGGGATTCACGGCCACGAC 93837 || ||||||||||||| || |||| ||| | || || ||||||| ||| ||| Sbjct 1169 GTGGCCGAGCGACCGCAGCACATGCTCATGAGAGTGTCCGTCGGGATCCACAAGATGGAC 1228 Query 93838 AT-GCCGAATGTTTTGCGGGCTTTCAGAGACATGCGG---GACAAGAGGTATACCATGGC 93893 || | || | ||| | | | || || ||| | || ||| ||| ||| || Sbjct 1229 ATCGACGCAGCCATTGAGA-CGTACA---ACCTGCTGTCAGAGAAGTGGTTCACCCACGC 1284 Query 93894 CACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTGAT 93953 | |||| || || |||||||| || ||| ||||||| |||| || |||||| | Sbjct 1285 CTCCCCCACGCTCTTCAACGCAGGAACCAACAGGCCACAGCTGTCCAGCTGCTTCCTGCT 1344 Query 93954 GACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACCAT 94013 | | || | |||| |||| || |||| ||||| || ||| | || || ||| Sbjct 1345 CGCCATGAAAGACGACAGCATCGAAGGCATTTACGACACGCTGAAGCAATGCGCCCTCAT 1404 Query 94014 CTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTG----CCAGGGGTT 94069 ||| |||| || |||||||| || ||| | | | | | | | | ||| Sbjct 1405 CTCCAAATCAGCCGGGGGAATTGGT----GTGGCGATAAGCTGCATCAGAACAACGGGGA 1460 Query 94070 CCTACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCA 94129 ||||||| ||| ||||| |||| ||||||||| ||||||| ||||| | || | || Sbjct 1461 GCTACATCGCCGGCACCAACGGCAACTCCAACGGGGTCGTCCCCATGCTGAGAGTTTACA 1520 Query 94130 ACAACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCT 94189 ||||| |||| || ||||| |||||||| || | ||| || | ||||| | | Sbjct 1521 ACAACACGGCACGTTACGTCGACCAGGGCGGCAACAAGAGACCAGGAGCCTTCGCCATGT 1580 Query 94190 ATCTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCA 94249 | || |||||||||||||| |||||| | ||| | || || |||||| ||| | Sbjct 1581 ACCTGGAGCCCTGGCACGCCGACGTGTTTGACTTCCTGGAGCTAAAGAAGAACACCGGAA 1640 Query 94250 ACGATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGA 94309 | || | |||| ||||| ||||| ||||||| || ||| | || ||||| || |||| Sbjct 1641 AGGAGGAGCAGAGAGCCAGGGACCTTTTCTACGGCCTGTGGATCCCCGACCTGTTCATGA 1700 Query 94310 AACGCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGT 94369 | | || |||| ||| | |||| ||| | |||||||| || || || || || Sbjct 1701 AGAGAGTGGAGAGCAACGAGGACTGGTCTCTGATGTGTCCCAACGAGTGCCCAGGGTTGG 1760 Query 94370 CCGACGTTTGTGGATCGCGTTTTGAAGACTTGTATGCTCGTTACGAATCGCAGGGCAAGG 94429 ||| || || | || ||| | | || | || || |||||| ||| Sbjct 1761 ACGAGTGCTGGGGGGAGGAGTTCGAAAAGCTCTACACCTCCTATGAGAAGCAGGGGAAGT 1820 Query 94430 CCAGGAAGGTTATGGATGCTAGGAAGCTGTGGGA-TCAG--ATCGTGGACGTACAGGTGG 94486 || | || || | ||| | || ||||| | | | |||| | | ||| | Sbjct 1821 TCAAGCGCGTGGTGAAGGCTCAGCAGTTGTGGCACGCCGTTATCGAGTCC---CAGACAG 1877 Query 94487 AGACGGGTACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAGC 94546 | || |||||||| ||||| ||| ||| ||| | |||| ||| |||||| ||| Sbjct 1878 AAACTGGTACGCCATACATGCTGTACAAAGACGCCTGCAACAGGAAGAGCAACCAACAGA 1937 Query 94547 ACCTCGGGGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGG 94606 | || || |||||| | || || ||||| || || ||||||| || | | Sbjct 1938 ATCTGGGCACCATCAAGTCCAGCAACCTCTGCACAGAAATCATCGAGTACACCAGCCACG 1997 Query 94607 ACGAGATTGCTGTGTGTAACCTGGGCTCCATCAACCTGTCCACTTTCGTGCGAGATGCCT 94666 | ||| | || |||||||| |||| ||| || | || || | || || | || Sbjct 1998 ATGAGGTAGCGGTGTGTAATCTGGCCTCAAT--TGCGCTCAACAT--GTACGTCACCCCG 2053 Query 94667 ACACGTCTACTGCTTCGTTCGATCTGGAGGAGCTTGTGAACTTCGCGGGAAG-GATGGTC 94725 || ||| || || || | | || | || | ||| || ||| Sbjct 2054 GAGCG--GACT------TTTGA-CTTTAAAAAACTGGCATCTGTGACCAAAGTAATCGTC 2104 Query 94726 TTGAACCTGAACAGGGTAATCGACAAGAACTTCTACCCCGTCCCGGAGGCGGAGAACTCA 94785 ||| |||||| | | ||||| | |||| ||| || || || || ||||| || || Sbjct 2105 AAGAATTTGAACAAGATCATCGAAATTAACTACTATCCAGTGCCCGAAGCGGAAAAGTCC 2164 Query 94786 AACCTGAAGCATCGGCCCATCGGCATCGGCGTCCAGGGTTTCGCGGACGCGCTGGTGATG 94845 ||| | || |||| || || || |||||||| ||||| ||||| || | | | Sbjct 2165 AACAAGCGCCACAGGCCGATTGGAATTGGCGTCCAAGGTTTGGCGGATGCCTTCATCCTC 2224 Query 94846 ATGCGTCTGCCCTACGACTCTGTCGACGCGGCGGGTTTGAATTTGAACATATTCGAAAGC 94905 |||||| || | ||| || || | ||||| | | || ||||| | Sbjct 2225 ATGCGTTACCCGTTCGAAAGCAAAGAGGCTCAGCTGCTGAATATTCAAATCTTCGAGGCC 2284 Query 94906 ATTTATTACGGGGCCAT-GAAACAATCCGTCCACTTGGCCAGATCGGACGGCGGGCCACA 94964 || || ||| ||| | || | | | | | | ||||| | || ||| || | Sbjct 2285 ATCTACCACGCCGCCCTGGAGGCGAGCTG-CGAGCTGGCC---GCCGAGCTCGGCCCCTA 2340 Query 94965 CGAATCGTTCCGCGGATCGCCCTTGGAACAGGGCATTTTTCAGTTCGACCTCTGGGGTGT 95024 ||| ||| | || || ||| | ||||||| | |||| |||| | |||| Sbjct 2341 CGAGACGTACGCAGGCTCTCCCGTCAGCAAGGGCATCCTGCAGTACGACATGTGGGAGAA 2400 Query 95025 GAAGCCCTCGGGTCTGTACGACTGGGAAGCT-CT--ACGCGCTGAT-GTTATCAAACACG 95080 ||||||| | | ||| |||| ||||||| || | | | ||| | ||| |||| Sbjct 2401 GAAGCCCACCGAACTGCTGGACT-GGAAGCTGCTGAAGGAGAAGATCGCCATC---CACG 2456 Query 95081 GTGTGAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATCCTTG 95140 | |||| ||| ||||| ||||||| ||||||||||||||||| || |||||||| | Sbjct 2457 GCGTGAGGAACAGCCTGCTGCTGGCCCCGATGCCCACGGCCTCCACCGCCCAGATCCTGG 2516 Query 95141 GCAACAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTCGCCG 95200 ||||||||||||| ||||| ||| |||| |||| | |||| | | |||| ||| ||| Sbjct 2517 GCAACAACGAGTCCATCGAAGCCTACACCAGCAACATCTACACCCGCAGGGTCCTCTCCG 2576 Query 95201 GGGAATTCCCCGTCATCAACAAGCACCTCCTACGGGACCTGACGTCTCTGGGTGTGTGGG 95260 | || || | || ||||| || || || ||||||||| || ||||| Sbjct 2577 GAGAGTTTCAGATCGTCAACCCTCATCTGCTCAAAGACCTGACGGAGAGAGGGCTGTGGA 2636 Query 95261 GTGACAAGGTCAAGAACCAACTGCTACGCGC-CAACGGCTCCGTCCAG 95307 | || || | |||||||| ||| | ||| | |||||| ||| | ||| Sbjct 2637 GCGAGGAGATGAAGAACCAGCTGAT-CGCTCACAACGGGTCCATTCAG 2683 Score = 89.7 bits (98), Expect = 5e-13 Identities = 144/207 (70%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 93331 GTCATGTTCGACAAGATCACTACCAGGGTGCGCAAACTTTGCGAGGGTCTGGACTCTGAC 93390 |||||||||||||| ||||| | | | || || ||| | || ||| |||||||| Sbjct 719 GTCATGTTCGACAAAATCACCTGTCGCATCCAGAAGCTGTGCTACGGACTGAACTCTGAC 778 Query 93391 TTCGTGGATCCCGTCGAGGTCACCATGAGAGTGAATCAGGGAATATATGCCGGGGTCACA 93450 || |||||||| | | || ||||||||| |||| ||||| | || ||| ||||| Sbjct 779 TTTGTGGATCCGGCCCAGATCACCATGAAGGTGATCCAGGGTTTGTACAGCGGCGTCACC 838 Query 93451 ACTGTCGAGCTCGATCTTCTGGCCGCGGAGACTTGTGCCTTCATGAGTACGAATCACCCG 93510 || || |||||||| ||||| || |||| ||| | | || || ||||| Sbjct 839 ACCGTGGAGCTCGACACGCTGGCTGCTGAGATCACCGCCACTCTCACAACTAAGCACCCC 898 Query 93511 GACTACTCCATTTTGGCTGCTCGAATC 93537 |||||| |||| | ||||| || ||| Sbjct 899 GACTACGCCATACTCGCTGCACGGATC 925 >seq270369 Length=13262 Score = 95.1 bits (104), Expect = 1e-14 Identities = 106/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 95077 CACGGTGTGAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATC 95136 || ||||||| ||| ||||| |||||||||||||||| || ||||| || |||||| Sbjct 5739 CATGGTGTGAGGAACAGTCTGCTCTTGGCCCCCATGCCCACAGCTTCCACCGCACAGATC 5680 Query 95137 CTTGGCAACAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTC 95196 || |||||||||||||| | || | | |||| |||| | |||| | | |||||||| Sbjct 5679 CTGGGCAACAACGAGTCCATTGAGGCTTACACCAGCAACATCTACACCCGCAGGGTGCTC 5620 Query 95197 GCCGGGGAATTCCCCGTCATCA 95218 | || || || | |||| || Sbjct 5619 TCGGGAGAGTTTCAGGTCAGCA 5598 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 492996418142720