Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20steindachneri_20[genbank_20GCA_5F001910785.1_202016-12- 20] 279,232 sequences; 648,011,071 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq95031 127 2e-24 seq270369 87.8 2e-12 >seq95031 Length=3790 Score = 127 bits (140), Expect = 2e-24 Identities = 489/748 (65%), Gaps = 34/748 (5%) Strand=Plus/Minus Query 146044 AGGGCCTTGATGAGATACTGGTTGACCACCTGAAACTCGCCGGCGAGAACGCGCCTCAGA 146103 ||| | |||| |||| ||||||| | ||||||||| |||| ||| || | | Sbjct 2616 AGGTCTTTGAGCAGATGAGGGTTGACGATCTGAAACTCTCCGGAGAGGACCCTGCGGGTG 2557 Query 146104 TACACGTTGCTGGTGAACGGCTCGAACGACTCGTTGTTACCGAGTATCTGCGCCGTCGTA 146163 || | |||||||||| | | |||| ||||||||||| || || ||||| || || | Sbjct 2556 TAGATGTTGCTGGTGTAGGCTTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAG 2497 Query 146164 GCGGTAGGCATGTACGCCACCAGCAAAGAGTTTCTCACGCCGTGTCTTTGAATCTTTTCC 146223 || || ||||| |||| ||||| ||| ||||||||||| | ||||| ||| Sbjct 2496 GCCGTGGGCATCGGGGCCAGCAGCAGGCTGTTCCTCACGCCGTGGATGGCGATCTTCTCC 2437 Query 146224 C---GTAGTTTGGACCAATTCCACAAATGATCCGTGGGATAGATATTGTAGTTGTCGTAA 146280 | || || | | |||| | | || ||||| | | | | ||||||| Sbjct 2436 TTCAGCAGCTT----CCAGTCCAGCAGT--TCGGTGGGCTTCTTCTCCCACATGTCGTAC 2383 Query 146281 TGCATAGTGCC---GCGGAACAGGGGGCTATTCT-CGTACGATTCATAAGGACCGTCGAT 146336 |||| |||| || || | | || || |||||| || || || ||| | | Sbjct 2382 TGCAGGATGCCCTTGCTGACGGGAGAGC----CTGCGTACGTCTCGTAGGGGCCGA-GCT 2328 Query 146337 CTT-GGCCAGTTCGCAGCTAGCTTCCAGAGCCGAAAAGTATATGGTCTCCGCGATCATGT 146395 | |||||| |||||||| || ||||| || | ||| |||| ||| ||| || Sbjct 2327 CGGCGGCCAGCTCGCAGCTCGCCTCCAGGGCGGCGTGGTAGATGGCCTCGAAGATT-TGA 2269 Query 146396 AGTTGACGCTCCTG-GCCTCCTCGCTGTCGTAGGGGATATCG-AGAAGCACAAAGGCGTC 146453 | | || ||| ||||| | ||| ||| | ||| || || | || | ||||| || Sbjct 2268 ATATTCAGCAGCTGAGCCTCTTTGCTTTCGAACGGG-TAACGCATGAGGATGAAGGCATC 2210 Query 146454 GGCGAGACCCTGTATCCCGACACCAACGGGGCGGTGTTTCTTGTT--ACTGTTC-GCAGC 146510 || | ||| || | || | |||| || | ||| |||||| ||| ||| || | Sbjct 2209 CGCCAAACCTTGGACGCCAATTCCAATCGGCCTGTGGCGCTTGTTGGACTTTTCCGCTTC 2150 Query 146511 GCCCGCAGTGGGATAGTGGTTGCTGTCGATGATCTTGTTGAGATTACGCACGACAATTTT 146570 | ||| ||| ||||| ||| | |||||||||||||| | ||| |||| | ||| Sbjct 2149 GG--GCACTGG-ATAGTAGTTAATTTCGATGATCTTGTTCAAATTCTTGACGATTACTTT 2093 Query 146571 CGTCAAACGATTC-AGCAGGACATAGTCAAATGTTTTAGTTTTAACGTTGACGCACTTGT 146629 |||| | ||| | || | ||||||| || | | ||||| || ||| Sbjct 2092 GGTCACA-GATGCCAGTTTTTTAAAGTCAAAAGTCCGC---TCCGGGGTGACGTACATGT 2037 Query 146630 TGACGGCGATAGAGGCCAAGTTACATACGGCAGTCTCGTCCTTGTCGCAATACTGCACAA 146689 ||| || || ||||||| ||||| || || ||| || | | | |||| | | Sbjct 2036 TGAGCGCAATTGAGGCCAGATTACACACCGCTACCTCATCGTGGCTGGTGTACTCGATGA 1977 Query 146690 TCTCGGCGCAGAGGTTGCTGCACTTGATGATGCCCAAAtttttttGGTTACTAAACTTGT 146749 | || | ||||||||||||| |||||||| |||||| ||| | |||||| || | ||| Sbjct 1976 TTTCTGTGCAGAGGTTGCTGGACTTGATGGTGCCCAGATTCTGTTGGTTGCTCTTCCTGT 1917 Query 146750 TGCAGGGGTCCTTGTAGAGCATGTACGG 146777 |||||| ||| ||||| |||||||| || Sbjct 1916 TGCAGGCGTCTTTGTACAGCATGTATGG 1889 >seq270369 Length=13262 Score = 87.8 bits (96), Expect = 2e-12 Identities = 86/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 146680 TACTGCACAATCTCGGCGCAGAGGTTGCTGCACTTGATGATGCCCAAAtttttttGGTTA 146739 |||| || ||||| | ||| || |||||| | |||||| |||||| ||| | ||||| Sbjct 6571 TACTCTACGATCTCCGTGCACAGATTGCTGGATTTGATGGTGCCCAGATTCTGCTGGTTG 6630 Query 146740 CTAAACTTGTTGCAGGGGTCCTTGTAGAGCATGTACGGTCCCCCGGTTTCG 146790 || | ||||||||| |||||||||||||||||| || ||||||||| Sbjct 6631 CTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTATGGCGTGCCGGTTTCG 6681 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 473841112007680