Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20steindachneri_20[genbank_20GCA_5F001910785.1_202016-12- 20] 279,232 sequences; 648,011,071 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq95031 159 3e-34 seq270369 95.1 1e-14 >seq95031 Length=3790 Score = 159 bits (176), Expect = 3e-34 Identities = 683/1069 (64%), Gaps = 18/1069 (2%) Strand=Plus/Plus Query 123205 GCACCGACGGAATCGCCTCCGGGCTCGAATCCATGCTGCGAGTTTACAATAACGCCGTGC 123264 ||||| |||| | | || |||| ||| |||||||| |||||||||| ||| | | | Sbjct 1473 GCACCAACGGCAACTCCAACGGGGTCGTCCCCATGCTGAGAGTTTACAACAACACGGCAC 1532 Query 123265 GGCACGTCGACCAGGGCGGCAA-ACGCAA--AGGCGCGATGGCGATCTATCTAGAACCGT 123321 | ||||||||||||||||||| | | | ||| || | || || || || || || | Sbjct 1533 GTTACGTCGACCAGGGCGGCAACAAGAGACCAGGAGCCTTCGCCATGTACCTGGAGCCCT 1592 Query 123322 GGCACGTTGATGTGTACGATTTTTTAAATTTAAAACGCAACATGGGGGCGGAAGAAAAGA 123381 |||||| || |||| || || | | |||| |||| || ||| || ||| Sbjct 1593 GGCACGCCGACGTGTTTGACTTCCTGGAGCTAAAGAAGAACACCGGAAAGGAGGAGCAGA 1652 Query 123382 AAGCCCGCGATTTGTTGTACGCTTTATGGGTACCCGATTTGTTTATGCGACGCGTAAAAG 123441 |||| | || | || |||| | ||| | ||||| |||| ||| | || | Sbjct 1653 GAGCCAGGGACCTTTTCTACGGCCTGTGGATCCCCGACCTGTTCATGAAGAGAGTGGAGA 1712 Query 123442 ACGACGGCGTGTGGTCGCTCATGTGTCCCGATCGGTGTCCCGGCTTGAGCGACGTTTACG 123501 | ||| | ||||| || ||||||||| | ||| || || ||| ||| | | Sbjct 1713 GCAACGAGGACTGGTCTCTGATGTGTCCCAACGAGTGCCCAGGGTTGGACGAGTGCTGGG 1772 Query 123502 GCAATCAGTTTGACGAGTTGTACGCGCAATACGAGCGCGAAGGCAAA--CAGGTTAGTCA 123559 | | |||| || || | ||| | || ||| | || || || | || Sbjct 1773 GGGAGGAGTTCGAAAAGCTCTACACCTCCTATGAGAAGCAGGGGAAGTTCAAGCGCGT-- 1830 Query 123560 GGTTCCGGCACGTGATTTGTTCAAATTTATTATCGAAACACAAGTCGAAACCGGAACGCC 123619 ||| ||| | | |||| | ||||||| | || ||||| || ||||| Sbjct 1831 GGTGAAGGCTCAGCAGTTGTGGCACGCCGTTATCGAGTCCCAGACAGAAACTGGTACGCC 1890 Query 123620 GTACATGCTCTACAAAGACGCCTGCAACAGGAAAACCAATCAGAGCAACTTGGGAACAAT 123679 |||||||| ||||||||||||||||||||||| | ||| || || |||| || || Sbjct 1891 ATACATGCTGTACAAAGACGCCTGCAACAGGAAGAGCAACCAACAGAATCTGGGCACCAT 1950 Query 123680 AAAATGTAGTAATCTTTGCTCCGAAATTATCGAATACAGCGATGCCGATCAAGTGGCCGT 123739 || | || || || ||| | ||||| ||||| |||| | |||| | || || || Sbjct 1951 CAAGTCCAGCAACCTCTGCACAGAAATCATCGAGTACACCAGCCACGATGAGGTAGCGGT 2010 Query 123740 GTGTAATTTGGCTTCGATTTGCG-TGAATCGTTGCGTCGAAAACGGCG----CTTTTAAT 123794 ||||||| |||| || | ||||| | || | |||| | ||| | ||||| | Sbjct 2011 GTGTAATCTGGCCTC-AATTGCGCTCAACATGTACGTC-ACCCCGGAGCGGACTTTTGAC 2068 Query 123795 TTCCAAACGCTCAAACGCATAACAAAAACTGTAGTAAAGAATTTGAACAAAATTATCGAT 123854 || ||| || | | || ||| | || |||||||||||||| || ||||| Sbjct 2069 TTTAAAAAACTGGCATCTGTGACCAAAGTAATCGTCAAGAATTTGAACAAGATCATCGAA 2128 Query 123855 GTTAATTTTTATCCTTTGGAGGAAGCGCGTTTGTCTAATTTGAAACACAGACCGGTCGGA 123914 |||| | ||||| || |||||| ||| || | ||||| ||| | ||| Sbjct 2129 ATTAACTACTATCCAGTGCCCGAAGCGGAAAAGTCCAACAAGCGCCACAGGCCGATTGGA 2188 Query 123915 GTGGGCATTCAAGGGTTGGCCGACGCGTTTGTAATGCTGCGCATGCCGTACGAAAGCGAC 123974 | ||| | ||||| ||||| || || || | | |||| |||| ||||||| | Sbjct 2189 ATTGGCGTCCAAGGTTTGGCGGATGCCTTCATCCTCATGCGTTACCCGTTCGAAAGCAAA 2248 Query 123975 GAAGCAAAGTTGCTTAATACGCAAATAGCCGAAACAATTTATTACGGCGCTTTGGAGGCG 124034 || || || |||| |||| ||||| ||| | || || ||| ||| |||||||| Sbjct 2249 GAGGCTCAGCTGCTGAATATTCAAATCTTCGAGGCCATCTACCACGCCGCCCTGGAGGCG 2308 Query 124035 AGCTGCGAACTTGCGAAAATTCACGGCGCGTACGAAAGTTACGCGGGCAGCCCGGCGAGC 124094 |||||||| || || | |||| | ||||| | ||||| ||| || | ||| Sbjct 2309 AGCTGCGAGCTGGCCGCCGAGCTCGGCCCCTACGAGACGTACGCAGGCTCTCCCGTCAGC 2368 Query 124095 CGAGGTATTTTGCAGTACGACATGTGGAATGCTACACCGACAAATTTGTGGGACTGGAGC 124154 || || ||||||||||||||||| | | || || | || |||||||| Sbjct 2369 AAGGGCATCCTGCAGTACGACATGTGGGAGAAGAAGCCCACCGAACTGCTGGACTGGAAG 2428 Query 124155 GTTTTAAAACAACGCATATCG--ACGCACGGTTTGCGTAACTCGCTGTTGGTGGCGTACA 124212 | | || | | | |||| | ||||| || | ||| ||| || |||| | Sbjct 2429 CTGCTGAAGGA--GAAGATCGCCATCCACGGCGTGAGGAACAGCCTGCTGCTGGCCCCGA 2486 Query 124213 TGCCGACGGCAACCACTGCTCAAATTTTAGGAAACAACGAATCCTTCGA 124261 |||| ||||| |||| || || || | || |||||||| ||| |||| Sbjct 2487 TGCCCACGGCCTCCACCGCCCAGATCCTGGGCAACAACGAGTCCATCGA 2535 >seq270369 Length=13262 Score = 95.1 bits (104), Expect = 1e-14 Identities = 99/130 (76%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 123588 ATTATCGAAACACAAGTCGAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAAC 123647 || |||||| | || ||||||||| ||||| |||||||||||||| |||||||||||| Sbjct 6698 ATCATCGAATCGCAGACCGAAACCGGCACGCCATACATGCTCTACAAGGACGCCTGCAAC 6639 Query 123648 AGGAAAACCAATCAGAGCAACTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAATT 123707 ||||| | ||| ||| || |||| || || |||| || ||||| ||| | || || Sbjct 6638 AGGAAGAGCAACCAGCAGAATCTGGGCACCATCAAATCCAGCAATCTGTGCACGGAGATC 6579 Query 123708 ATCGAATACA 123717 | || |||| Sbjct 6578 GTAGAGTACA 6569 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450425528030720