Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20steindachneri_20[genbank_20GCA_5F001910785.1_202016-12- 20] 279,232 sequences; 648,011,071 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq95031 187 3e-42 seq270369 89.7 6e-13 >seq95031 Length=3790 Score = 187 bits (206), Expect = 3e-42 Identities = 845/1310 (65%), Gaps = 52/1310 (4%) Strand=Plus/Minus Query 115903 TAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 115962 ||||||||| | ||||| | || | | |||| ||||| |||| ||| ||||| |||||| Sbjct 2556 TAGATGTTGCTGGTGTAGGCTTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAG 2497 Query 115963 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTGCGGAGACCCACCCCCCTAATG-----C 116017 || |||||||| || |||| || |||||||| | ||| || ||| | Sbjct 2496 GCCGTGGGCATCGGGGCCAGCAGCAGGCTGTTCCT------CACGCCGTGGATGGCGATC 2443 Query 116018 GT-TCCTTGAGGGCGTCCCAGTC--GTAGTTGAGCTTTGTCTCCCCCTCCCACATATCAA 116074 | ||||| || | |||||| | |||| | | | || | ||||||||| || Sbjct 2442 TTCTCCTTCAGCAGCTTCCAGTCCAGCAGTTCGG--TGGGCTTCTTCTCCCACATGTCGT 2385 Query 116075 ACTGGAGGATACCTTGG--GACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAAC 116132 |||| ||||| || | | |||| || || || | | ||||| || ||||| | Sbjct 2384 ACTGCAGGATGCCCTTGCTGACG--GGAGAGCCTGCGTACGTCTCGTAGGGGCCGAGCTC 2327 Query 116133 CTCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGC 116192 | |||| ||| |||||||||| ||||| ||||| || || | ||| || || || Sbjct 2326 GGCGGCCAGCTCGCAGCTCGCCTCCAGGGCGGCGTGGTAGATGGCCTCGAAGATTTGAAT 2267 Query 116193 ATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGACGGCACAAAATAAATACATCCGC 116252 ||||| || ||||| | | || |||| | ||| | || || ||||||| Sbjct 2266 ATTCAGCAGCTGAGCCTCTTTGCTTTCGAACGGGTAACGCATGAGGATGAAGGCATCCGC 2207 Query 116253 GAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTC 116312 | ||||||||| || | ||||| || | || | | | || |||||| || Sbjct 2206 CAAACCTTGGACGCCAATTCCAATCGGCCTGTGGCGCTTGTTGGACTTTTCCGCTTCGGG 2147 Query 116313 CACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGAT 116372 ||| ||||| | || | ||||| | | | || | ||| ||| || || || || | Sbjct 2146 CACTGGATAGTAGTTAATTTCGATGATCTTGTTCAAATTCTTGACGATTACTTTGGTCAC 2087 Query 116373 TTCATGA-AGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGG 116431 ||| || |||| | |||||| | || ||| |||| ||| | || | Sbjct 2086 AG-ATGCCAGTTTTTTAAAGTCAAAAGTCCG---CTCCGGGGTGACGTACATGTTGAGCG 2031 Query 116432 CGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCG 116491 | ||||| |||||||||||||| | |||||| | |||||||| || ||||| | Sbjct 2030 CAATTGAGGCCAGATTACACACCGCTACCTCATCGTGGCTGGTGTACTCGATGATTTCTG 1971 Query 116492 TACACAAATT--TGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACA 116549 | || | || || | ||| |||||||||| |||| ||| || ||| |||| || Sbjct 1970 TGCAGAGGTTGCTGGA--CTTGATGGTGCCCAGATTCTGTTGGTTGCTCTTCCTGTTGCA 1913 Query 116550 CGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTT 116609 || || ||||| ||||| |||||||| || || || || ||||||| || || || | Sbjct 1912 GGCGTCTTTGTACAGCATGTATGGCGTACCAGTTTCTGTCTGGGACTCGATAACGGCGTG 1853 Query 116610 CCA-TACATCGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGT 116668 ||| || | | | || ||| | ||| ||||| || ||| || |||| Sbjct 1852 CCACAACTGCTGAGCCT-TCACCACGCGCTTGAACTTCCCCTGCTTCTCATAGGAGGTGT 1794 Query 116669 AGAGGGCCTCAAACTCTTCACCCACAGC-CTCTGAGAGCCCTGGTGCCTTATCTGGACAG 116727 |||| || ||||| || ||| |||| ||| | |||||| || | ||||| Sbjct 1793 AGAGCTTTTCGAACTCCTC-CCCCCAGCACTCGTCCAACCCTGGGCACTCGTTGGGACAC 1735 Query 116728 AAGAGAGACCATTGACCACCCT--CCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGA 116785 | |||||||| | || | | ||| || | ||||||||| ||||| |||||||| | Sbjct 1734 ATCAGAGACCA--GTCCTCGTTGCTCTCCACTCTCTTCATGAACAGGTCGGGGATCCACA 1677 Query 116786 GCGCCG-AGAAGAGATCCC-GACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTC 116843 | |||| |||| || |||| | | ||| || | | || || || | ||| Sbjct 1676 G-GCCGTAGAAAAGGTCCCTGGCTCTCTGCTCCTCCTTTCCGGTG-TTCTTCTTTAGCTC 1619 Query 116844 CAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTGCG 116903 || ||||| | | || |||||||| || |||||||||| |||| | | ||| | Sbjct 1618 CAGGAAGTCAAACACGTCGGCGTGCCAGGGCTCCAGGTACATGGCGA-AGGCTCCTGGTC 1560 Query 116904 AC----GACCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAA 116959 | || |||||| || || | ||||| ||| | || | ||||| || | Sbjct 1559 TCTTGTTGCCGCCCTGGTCGACGTAACGTGCCGTGTTGTTGTAAACTCTCAGCATGGGGA 1500 Query 116960 TGATACCATCAGATTGGCCATTTGT-CCCCCGAATACGAGACTTGTTGGCTCTGA--CAT 117016 || || | || | ||| || || || ||| | | ||| | ||||| || Sbjct 1499 CGACCCCGTTGGAGTTGCCGTTGGTGCCGGCGATGTAGCTCCCCGTT-GTTCTGATGCAG 1441 Query 117017 CGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGAC 117076 | | || || |||||| ||||| || | || ||||| | ||||| | | | || Sbjct 1440 CTT--ATCGCCACACCAATTCCCCCGGCTGATTTGGAGATGAGGGCGCATTGCTTCAGCG 1383 Query 117077 TGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTT 117136 || |||| || || ||||| ||| | || | |||| ||||||||||| |||| | Sbjct 1382 TGTCGTAAATGCCTTCGATGCTGTCGTCTTTCATGGCGAGCAGGAAGCAGCTGGACAGCT 1323 Query 117137 GTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAAC 117186 ||||||| || || ||||||||||| || || | |||||| ||||| Sbjct 1322 GTGGCCTGTTGGTTCCTGCGTTGAAGAGCGTGGGGGAGGCGTGGGTGAAC 1273 >seq270369 Length=13262 Score = 89.7 bits (98), Expect = 6e-13 Identities = 75/92 (82%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 115903 TAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 115962 ||||||||| | ||||| | ||||| | |||| ||||| |||| ||| || || ||||| Sbjct 5636 TAGATGTTGCTGGTGTAAGCCTCAATGGACTCGTTGTTGCCCAGGATCTGTGCGGTGGAA 5695 Query 115963 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTT 115994 |||||||||||||| |||| ||| || ||||| Sbjct 5696 GCTGTGGGCATGGGGGCCAAGAGCAGACTGTT 5727 Score = 82.4 bits (90), Expect = 9e-11 Identities = 114/158 (72%), Gaps = 4/158 (3%) Strand=Plus/Plus Query 116460 CTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATT--TGAACTCTTAATGGTG 116517 |||||| ||| |||||||||| || ||||| |||| ||| || | | | |||||| Sbjct 6555 CTCATCTTTACTTGTGTACTCTACGATCTCCGTGCACAGATTGCTGGATT--TGATGGTG 6612 Query 116518 CCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAGAGCATATATGGCGTC 116577 |||| |||| || || ||| |||| || || |||||||||||||| |||||||| Sbjct 6613 CCCAGATTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTATGGCGTG 6672 Query 116578 CCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCATAC 116615 || || || || || || | || || || | ||| || Sbjct 6673 CCGGTTTCGGTCTGCGATTCGATGATGGCGTACCACAC 6710 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 611365814469120