Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20steindachneri_20[genbank_20GCA_5F001910785.1_202016-12- 20] 279,232 sequences; 648,011,071 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq95031 196 8e-45 seq270369 98.7 2e-15 >seq95031 Length=3790 Score = 196 bits (216), Expect = 8e-45 Identities = 515/771 (67%), Gaps = 24/771 (3%) Strand=Plus/Minus Query 204844 GGCCAGATTGCACACCGCGGG-TCTGTGTGGCTCGCTCACCTCCACGATCTCGGTGCACA 204902 ||||||||| |||||||| || |||||| | || || | ||| || ||||| | Sbjct 2023 GGCCAGATTACACACCGCTACCTCATCGTGGCTGGTGTAC-TCGATGATTTCTGTGCAGA 1965 Query 204903 AGTTACCGCACTTCACCACCCCCACATGCTGCTGGTTAGACTTGCGGTTACAGGAGTCCT 204962 ||| | | |||| | |||| || ||| ||||| ||| | ||| |||| ||| | Sbjct 1964 GGTTGCTGGACTTGATGGTGCCCAGATTCTGTTGGTTGCTCTTCCTGTTGCAGGCGTCTT 1905 Query 204963 TGTACATCATGAACGGCATTCCGTTCTCCATCTGAGA-TCGCAGAATGTGGGTCCACAAT 205021 |||||| |||| | ||| | || | || |||| || ||| | || | | |||||| Sbjct 1904 TGTACAGCATGTATGGCGTACCAGTTTCTGTCTGGGACTCG-ATAACGGCGTGCCACAAC 1846 Query 205022 TCGCGAGCCT---CCACTTGCTTCACGTACATCCCTTGAGACTCGTATTTTGTGTACAGC 205078 | |||||| |||| |||| | || |||| || ||| || ||||| ||| Sbjct 1845 TGCTGAGCCTTCACCACGCGCTTGA---ACTTCCCCTGCTTCTCATAGGAGGTGTAGAGC 1789 Query 205079 GCCACAAAGTCAGAACC---GTACACGTCCATCAGCCCTGGACATTTTTTGGGACACATC 205135 | || || || | || |||||| | ||||| || | |||||||||||| Sbjct 1788 TTTTCGAACTCCTCCCCCCAGCACTCGTCCAAC---CCTGGGCACTCGTTGGGACACATC 1732 Query 205136 AGAGACCACATCTGATCGTCTTTCACCCTCTCCATAAACAGGTCGCTGATCCACAGGCCG 205195 |||||||| || | | | ||| |||| ||| ||||||||| ||||||||||||| Sbjct 1731 AGAGACCAGTCCTCGTTGCTCTCCACTCTCTTCATGAACAGGTCGGGGATCCACAGGCCG 1672 Query 205196 TAAAACAGATCACGGGCCCTAATTCCGTCGTCTCCAAGGTTCTTTTTCAAGTCCAGCCAA 205255 || || || || | ||| || | || | ||| |||||| || | ||||| || Sbjct 1671 TAGAAAAGGTCCCTGGCTCTCTGCTCCTCCTTTCCGGTGTTCTTCTTTAGCTCCAGG-AA 1613 Query 205256 GCCGCA-ATGTCGGCGTGCCACGGCTCTAACCACACGGCCATTGCGCCTGGCCTCTTGTT 205314 | | | | |||||||||||| ||||| | ||| ||| | || ||||| |||||||| Sbjct 1612 GTCAAACACGTCGGCGTGCCAGGGCTCCAGGTACATGGCGAAGGCTCCTGGTCTCTTGTT 1553 Query 205315 CCCACCCTGGTCCACCATGCGAGTCATCGCGTTGAAAACTCGCAGCATCGGCACCAGACC 205374 || |||||||| || || | | | |||| |||||| |||||| || || | || Sbjct 1552 GCCGCCCTGGTCGACGTAACGTGCCGTGTTGTTGTAAACTCTCAGCATGGGGACGACCCC 1493 Query 205375 GTTGGCGGTCCCGTTCGTGCTGTTGATG--GCCGAGCCTTCAGCCCTCACGTTGGAGATG 205432 ||||| | | ||||| |||| | |||| || | || | || | | | || Sbjct 1492 GTTGGAGTTGCCGTTGGTGCCGGCGATGTAGCTCCCCGTT--GTTCTGATGCAGCTTATC 1435 Query 205433 GCCGCGCCAATCCCGCCAGAACACTTGGCGATCTGGGCGCACTCTTGCAGAGTGCTGTAG 205492 ||| | ||||| || || | | |||| ||| ||||||| | | ||| ||| ||| Sbjct 1434 GCCACACCAATTCCCCCGGCTGATTTGGAGATGAGGGCGCATTGCTTCAGCGTGTCGTAA 1375 Query 205493 ATGCCTGCGATGGAATCGTCCGCCAGTGTCACCAGATAGCACGAAGCCAGCT-TGGCAAA 205551 |||||| ||||| ||||| || | | ||| |||| | ||||| |||| Sbjct 1374 ATGCCTTCGATGCTGTCGTCTTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGTGGC-CT 1316 Query 205552 GTTGGTGCCCGCGTGGAAGAGCGTGGGGCTGGCGTGGCTGAAGCGCTTCTC 205602 |||||| || |||| ||||||||||||| ||||||| |||| | |||||| Sbjct 1315 GTTGGTTCCTGCGTTGAAGAGCGTGGGGGAGGCGTGGGTGAACCACTTCTC 1265 Score = 161 bits (178), Expect = 2e-34 Identities = 291/419 (69%), Gaps = 5/419 (1%) Strand=Plus/Minus Query 204100 CCTGA-TCGAGCCGTTGTCGGCCATCAGTCTCATCCTCGTCTCCTCCCCCCACATGCCCA 204158 ||||| | || ||||||| || ||||| || || ||||||| | ||||| |||| Sbjct 2684 CCTGAATGGACCCGTTGTGAGCGATCAGCTGGTTCTTCATCTCCTCGCTCCACA-GCCCT 2626 Query 204159 ACCTGA-TCAGCTCCCGCACCAGGTGGGGGTTGATGATCTGAAAGTCTCCGGACAGCACC 204217 || |||| || | ||| || ||||||| ||||||||| |||||||| || ||| Sbjct 2625 CTCTCCGTCAGGTCTTTGAGCAGATGAGGGTTGACGATCTGAAACTCTCCGGAGAGGACC 2566 Query 204218 CCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAACGCCTCGTTGTTGCCGAAAATCTGA 204277 | |||||| | | |||| ||||| | | ||||| | |||||||||||| | ||||| Sbjct 2565 CTGCGGGTGTAGATGTTGCTGGTGTAGGCTTCGATGGACTCGTTGTTGCCCAGGATCTGG 2506 Query 204278 GCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAGGGAGTTGCGCACACCGTATTTTTGG 204337 |||||| |||||||||||| || ||||| |||||| ||| | ||| |||| | | Sbjct 2505 GCGGTGGAGGCCGTGGGCATCGGGGCCAGCAGCAGGCTGTTCCTCACGCCGTGGATGGCG 2446 Query 204338 ACCCTGCGCTTCAGAGAGGTCCAGTCGTGCATCGCACTGGGTTTCACGCCCCACATGTCG 204397 | | | |||||| ||||||| ||| | |||| ||| ||||||||||| Sbjct 2445 ATCTTCTCCTTCAGCAGCTTCCAGTCCAGCAGTTCGGTGGGCTTCTTCTCCCACATGTCG 2386 Query 204398 AACTGAAAGATGCCTTGACTGACTGGGCTGCCCTTGTACGTCGGATA-AGGCTGATCCTC 204456 |||| | |||||| | ||||| || ||| ||||||| || ||| || ||| Sbjct 2385 TACTGCAGGATGCCCTTGCTGACGGGAGAGCCTGCGTACGTCTCGTAGGGGCCGA-GCTC 2327 Query 204457 TTCTGCCAGCTTGCACGAGGCGGCCATGGCGTGATAGTACATGGTCTCAAAGATCTGAA 204515 | ||||||| ||| || ||| |||| | ||| |||| ||| ||||| |||| Sbjct 2326 GGCGGCCAGCTCGCAGCTCGCCTCCAGGGCGGCGTGGTAGATGGCCTCGAAGATTTGAA 2268 >seq270369 Length=13262 Score = 98.7 bits (108), Expect = 2e-15 Identities = 105/139 (76%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 204189 TGATGATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTT 204248 || ||| |||||| ||||| || ||||||| |||||| | | |||| ||||| | | | Sbjct 5598 TGCTGACCTGAAACTCTCCCGAGAGCACCCTGCGGGTGTAGATGTTGCTGGTGTAAGCCT 5657 Query 204249 CGAACGCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGA 204308 | | | |||||||||||| | ||||| |||||| || ||||||||||| |||| || Sbjct 5658 CAATGGACTCGTTGTTGCCCAGGATCTGTGCGGTGGAAGCTGTGGGCATGGGGGCCAAGA 5717 Query 204309 GCAGGGAGTTGCGCACACC 204327 |||| ||| | |||||| Sbjct 5718 GCAGACTGTTCCTCACACC 5736 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 792379790289920