Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20steindachneri_20[genbank_20GCA_5F001910785.1_202016-12- 20] 279,232 sequences; 648,011,071 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq97422 95.1 9e-14 seq98419 87.8 1e-11 >seq97422 Length=7209 Score = 95.1 bits (104), Expect = 9e-14 Identities = 106/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 518165 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 518224 |||||||| || || ||||| | |||||||||||| || || || || || | | ||| Sbjct 4329 TTTTTATCCAGGCCGTACGCGATAGCAGCAGCAGTCGGCTCGTTGATGATACGAAGGACA 4388 Query 518225 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 518284 ||||| |||| ||| | ||||||||||| ||||| || | || || || || || || Sbjct 4389 TTAAGCCCAGAAATGGTGCCTGCATCTTTGGTGGCCTGGCGCTGAGAGTCATTGAAGTAG 4448 Query 518285 GCAGGAACAGTAATAACGGCAT 518306 ||||| ||||| | || |||| Sbjct 4449 GCAGGCACAGTCACGACTGCAT 4470 >seq98419 Length=5717 Score = 87.8 bits (96), Expect = 1e-11 Identities = 192/285 (67%), Gaps = 2/285 (1%) Strand=Plus/Minus Query 518021 CGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAA 518080 || || ||||| ||||| || |||| | ||| | ||| | ||| ||| | || | || Sbjct 1784 CGGTTGTCAAAGTCTTCTCCACCCAGGTGAGTGTCTCCAGCCGTGGCTTTCACCTCAAAG 1725 Query 518081 AGTCCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATA 518140 | || ||||||| | || | | || || |||||| || |||| ||||| || Sbjct 1724 ATACCGTCTTCAATGGTCAGGATGGACACGTCGAAGGTTCCTCCGCCCAAGTCAAAGATC 1665 Query 518141 AGTACATTCATTTCTT-TGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGT 518199 || || || |||| ||||||| || | || ||||| ||||| | || || || || Sbjct 1664 AGGACGTTACGTTCTCCTGTCTTGCTTCTG-TCCAGACCGTACGCGATGGCGGCCGCCGT 1606 Query 518200 TGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGC 518259 || || || || || |||| || | || || || || |||||||||||||| || Sbjct 1605 CGGCTCGTTGATGATCCTCAGGACGTGCAGTCCTGCGATGACGCCTGCATCTTTAGTCGC 1546 Query 518260 TTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGC 518304 |||| || || ||||| || || || || || || || || || Sbjct 1545 CTGTCGCTGGGAGTCGTTGAAGTACGCCGGGACTGTGATGACAGC 1501 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3766965988369792