Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20steindachneri_20[genbank_20GCA_5F001910785.1_202016-12- 20] 279,232 sequences; 648,011,071 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq98419 356 3e-93 seq43135 228 1e-54 seq97422 185 1e-41 >seq98419 Length=5717 Score = 356 bits (394), Expect = 3e-93 Identities = 1044/1594 (65%), Gaps = 32/1594 (2%) Strand=Plus/Minus Query 6569 TCATCTTCATCTTTATACTTTTCCGCATCTTGGACCATCTTTTCAATGTCTTCTTTCGAT 6628 || || ||| |||| || || || || || || |||||| | || || || ||||| Sbjct 2666 TCGTCCTCAGCTTTGTATTTGTCGGCGTCCTGCACCATCCTCTCGATATCCTCTTTGCTC 2607 Query 6629 AATCTCCCCTTATCATTCGTAATCGTAATCTTTTCGGATTTACCCGAGGCCTTATCTTCA 6688 | || |||||||| || || || || ||||||| ||| || | | ||| | | || Sbjct 2606 AGTCGGCCCTTATCGTTGGTGATGGTGATCTTTTTCTCTTTGCCGGTG--CTTTTGTCCA 2549 Query 6689 GCACTTACA--TTCAAAATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTG 6746 | | ||| |||||||| || || ||||| || ||||| | || | || || || Sbjct 2548 CCGCGGACACGTTCAAAATGCCGTTGGCATCCACGTCGAAGGTGACCTCGATCTGCGGG- 2490 Query 6747 TACCCCTCG--GTGCGGCTGGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATC 6804 |||||||| | |||| || || ||||| | ||||| | || || | |||| || Sbjct 2489 -ACCCCTCGCGGAGCGGGCGGGATTCCCGTCAGCTCAAACTTGCCCAGCAGGTTGTTGTC 2431 Query 6805 CGTCGCCTTCTTACGTTCACCTTCATAGACTTTAATTGTCACCGCAGGTTGATTATCTTG 6864 | | | | | ||||| ||||||||||| | || ||| | || || || || Sbjct 2430 CTTGGTCATGGCCCGTTCCCCTTCATAGACCTGGATGAGGACCCCGGGCTGGTTGTCAGA 2371 Query 6865 TGCCGTTGAGAAGATTTGTTCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCGG 6924 || | ||| | || || |||| || || || || || | | ||| | | Sbjct 2370 GTAGGTGGTGAACACCTGGGTTTGTTTAGTGGGGATGGTGGTGTTACGCTTAATCAGAGA 2311 Query 6925 GGTCATAATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAA 6984 ||||| | || || || |||| || || |||||||| | |||||||| || | Sbjct 2310 CGTCATGACCCCTCCAGCGGTCTCGATACCCAGGGACAGAGGCGCCACGTCCAGCAGCAG 2251 Query 6985 CAGGTCTTGAACAGATTCGTTCCCT------TCACCCGTTAAGATGGCGGCTTGGACCGT 7038 || ||| ||||| ||| || || || || | |||||||| ||||| | Sbjct 2250 CACGTCCTGAAC------GTTGCCCGAGGTATCGCCTGTGAGAATGGCGGCCTGGACGGC 2197 Query 7039 CGCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAA 7098 || || || || |||||||| || ||||| || | || ||||| || | ||||| || Sbjct 2196 GGCGCCATAAGCCACCGCCTCGTCTGGGTTGATGCTCTTGTTCAGCTCCCTGCCGTTGAA 2137 Query 7099 ATAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGAT 7158 ||| | | | || || ||||| ||||| || || || || ||||||| ||||| Sbjct 2136 GAGATCGGCCAGGAGTTTCTGGATTTTAGGGATGCGGGTGGAGCCTCCGACCAGGACGAT 2077 Query 7159 TTCATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCAT 7218 |||| | ||| || || || || | ||| | | | ||| || || || || | Sbjct 2076 GTCATGGATCTTCCCCTTGTCCATTTTGGCGTCCCTCATGGCTTTCTCCACCGGCTCTAA 2017 Query 7219 ACATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATA 7278 | | ||||| ||| ||||| |||||||| || || | ||| ||||| || || Sbjct 2016 GGTTCCCCTGAACAGGTCGGAGCACAGCTCCTCAAAGCGAGCCCTGGTGATGGAGGTGTA 1957 Query 7279 GAAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAA 7338 ||| || ||| || | | ||||| || || ||| | | || | | || || | Sbjct 1956 GAAGTCGGTGCCCTCAAACAGAGAATCGATCTCGATGCTGGCCTGGGAGCTGGAGGACAG 1897 Query 7339 CGTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGA 7398 || | ||| || | |||||| || || || | | | | || | | ||| | Sbjct 1896 GGTCCTCTTGGCCCTCTCACAAGCTGTGCGCAGCCTCCTCAATGCTCTCTTGTTCTGGCT 1837 Query 7399 AATATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATC 7458 || || ||||| ||||| | || ||||| || ||||| | | | | || Sbjct 1836 GATGTCCTTCTTGTGTTTCCTCTTGAACTCCTCCATAAAGTGGCTGACCATGCGGTTGTC 1777 Query 7459 GAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCC 7518 || ||||| ||||||| ||| || || || || || ||||| || ||||||||||| | Sbjct 1776 AAAGTCTTCTCCACCCAGGTGAGTGTCTCCAGCCGTGGCTTTCACCTCAAAGATACCGTC 1717 Query 7519 TTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTT 7578 ||||||| | | | || || || || || || || |||| |||||| || || ||||| Sbjct 1716 TTCAATGGTCAGGATGGACACGTCGAAGGTTCCTCCGCCCAAGTCAAAGATCAGGACGTT 1657 Query 7579 -CGTA-TCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCA 7636 ||| || | ||||| |||| || |||||||||||||| || |||||||| || || Sbjct 1656 ACGTTCTCCT-GTCTTGCTTCTG-TCCAGACCGTACGCGATGGCGGCCGCCGTCGGCTCG 1599 Query 7637 TTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCC-GCATCTTTCGTCGCTTGTCG 7695 || || || | || || ||| || || || | ||| |||||||| ||||| ||||| Sbjct 1598 TTGATGATCCTCAGGACGTGCAGTCCTGCGAT-GACGCCTGCATCTTTAGTCGCCTGTCG 1540 Query 7696 TTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAG 7755 || || ||||| ||||| |||||||| || | ||| || | | || || | || || Sbjct 1539 CTGGGAGTCGTTGAAGTACGCCGGGACTGTGATGACAGCTTTGGACACCTTTTGGCCCAG 1480 Query 7756 ATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGC 7815 || | ||| || || || ||||| || || ||||| || |||||||| |||| Sbjct 1479 GTAGGCTTCAGCAATCTCCTTCATCTTCACCAGGACCATGGAGGAAATCTCCTCAGGGTT 1420 Query 7816 AAACTGTTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACCGGG 7875 || |||| || || || || |||| ||| |||| || | | | || Sbjct 1419 GAAGGCTTTCTCCTCCCCTTTGTGCTCCACTTGAATTTTGGGCTTCCCTCCGTCTCC--- 1363 Query 7876 GATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCT 7935 ||| ||||| | | ||||| |||||||| | || ||| | || || |||||| Sbjct 1362 GATCACCTTGAAGGGCCAATGCTTCATATCCGCCTGCACCACTGCATCATCAATCTTTCT 1303 Query 7936 TCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTT 7995 ||| || || | ||| |||||||| || ||||| ||||||||| || |||||||| Sbjct 1302 TCCAATCAGTCTCTTGGCATCAAACACGGTGTTGCTGGGGTTCAAAGCCACCTGGTTCTT 1243 Query 7996 CGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGT 8055 || ||||||||||| || | || | | || || ||||| ||||| ||||| || Sbjct 1242 GGCTGCGTCCCCGATGAGCC--TC-TCTGTGTCAGTGAACGCCACGTAGCTGGGGGTGGT 1186 Query 8056 TCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCA 8115 | || || |||||||| || || |||||||| ||| || | || ||||| || Sbjct 1185 CCTGTTGCCCTGGTCGTTGGCGATGATTTCTACTTTTCCGTGCTGGAAAACCCCGACACA 1126 Query 8116 CGAATACGTTGTTCCTAAATCAATACCGATTGCT 8149 || || || || || | ||||| ||||| ||| Sbjct 1125 GGAGTAGGTGGTGCCCAGGTCAATGCCGATCGCT 1092 >seq43135 Length=3723 Score = 228 bits (252), Expect = 1e-54 Identities = 829/1287 (64%), Gaps = 24/1287 (2%) Strand=Plus/Plus Query 6868 CGTTGAGAAGATTTGTTCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCGGGGT 6927 ||| |||||||| || | ||| || || || || || |||| || | || || Sbjct 1204 CGTGGAGAAGATCTGGGTCTGCTTGGAGGGGATGGTGGTGTTTCGTTTGATTAGAGGTGT 1263 Query 6928 CATAATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAACAG 6987 ||||| || || | || |||| || |||||||| || | |||||||| || | ||| Sbjct 1264 CATAACTCCGCCTACGGTCTCGATGCCCAGAGACAGGGGAGCCACGTCCAGCAGCAGCAG 1323 Query 6988 GTCTTGAACAGATTCGTTCCCT------TCACCCGTTAAGATGGCGGCTTGGACCGTCGC 7041 || || || |||| || || ||| | | |||||| || ||||||| || Sbjct 1324 ATCCTGGAC------GTTCTCTGAAGTGTCGCCCATGAGGATGGCAGCCTGGACCGCTGC 1377 Query 7042 CCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATA 7101 ||||| || || || ||||| ||||| || | || ||||||||| | ||||||||| Sbjct 1378 ACCGTACGCCACAGCTTCATCTGGGTTGATGCTCTTGTTCAGTTCTCTGCCGTTAAAAAG 1437 Query 7102 ATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTC 7161 ||| || | | || ||||| ||||||| ||| || || ||||||| || || || Sbjct 1438 GTCCTGCAAGAGCTTCTGGATTTTGGGGATTCTTGTGGAGCCGCCGACCAGGACAATCTC 1497 Query 7162 ATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATACA 7221 || | || || || || | ||| | ||| | | | || ||||| || |||| Sbjct 1498 ATGGATCTTGGACTTGTCCAGCTTGGCGTCCTGCAAGGACTTCTCGACTGGCTCCAGTGT 1557 Query 7222 TTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAA 7281 | | ||| | || | || |||||||| ||||| | || ||||| || ||||| Sbjct 1558 TCCCCTGAAGAGCTCTGCATTGAGCTCCTCAAAGCGTGCCCTCGTGATGGAGGTGTAGAA 1617 Query 7282 ATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAACGT 7341 || | ||| ||| | | || || || || | | | | || | | || || | || Sbjct 1618 GTCGATGCCCTCGAACAGAGAGTCGATCTCGAGGCTGGCCTGGGTGCTGGAGGACAGGGT 1677 Query 7342 TCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAAT 7401 | ||| || | ||| || ||||| || | | | | || | | || | || Sbjct 1678 CCTCTTCGCTCTCTCGCAAGCCGTACGCAGTCTCCTCACCGCTCTCTTATTCTGGCTGAT 1737 Query 7402 ATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCGAA 7461 || ||||| ||||| | |||||| || || ||||| | | | || || Sbjct 1738 GTCCTTCTTGTGTTTTCTTTTAAATTCCTCTACAAAGTGGTTGACCATCCGGTTGTCAAA 1797 Query 7462 ATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTC 7521 || || || || | ||| || || |||||||| ||||| || |||||||| || | || Sbjct 1798 GTCCTCCCCGCCAAGGTGCGTGTCTCCCGCGGTGGCTTTCACCTCAAAGATGCCGTCGTC 1857 Query 7522 AATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGT 7581 ||| | | | || || ||||| || || || || || ||||| ||||| ||||| Sbjct 1858 GATGGTCAGGATGGACACGTCAAATGTGCCTCCGCCGAGATCAAAGATGAGCACGTTGCG 1917 Query 7582 ATCGTCGTCTTTGTTCTT-ATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAA 7640 || || ||||| ||| ||| || ||||| ||||| || || ||||| || || || | Sbjct 1918 CTC-TCCTCTTTTACCTTTATCCAGGCCGTAGGCGATGGCTGCTGCCGTGGGCTCGTTGA 1976 Query 7641 TAATAC-GAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGC 7699 | || | || ||| |||||| |||| || | || || || || ||||| | || Sbjct 1977 TGATCCTGAGGAC-GTTCAGTCCAGAGATCACCCCGGCGTCCTTGGTGGCTTGCCTCTGA 2035 Query 7700 GAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATAC 7759 || ||||| || || || || || || | ||| |||| | || ||| || || || Sbjct 2036 GAGTCGTTGAAATAAGCTGGAACTGTGATGACTGCGTTTGACACCCTCTGTCCCAGGTAG 2095 Query 7760 GATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAAAC 7819 | || || || || |||||||| || | ||| || || || ||||| | || Sbjct 2096 GCCTCAGCAATCTCCTTCATTTTCACCAGGATCATGGAGGAGATTTCTTCCGGGAAGAAG 2155 Query 7820 TGTTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACCGGGGATA 7879 | || || || || || || || | | |||| || | || || || ||| Sbjct 2156 TCCTTGGTCTCCCCTTTGTGCTCCACCTGGACTTTGGGCTT---CCCATCATCGCTGATC 2212 Query 7880 ACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCTTCCG 7939 || || | | ||| ||||| || ||||| ||| |||||||| ||| Sbjct 2213 ACTTTGAAAGGCCAGAGCTTCATGTCAGACTGGACGACGGCGTCGCTGAACTTTCTCCCG 2272 Query 7940 ATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCC 7999 || || ||||| || || || || ||||| |||||||||||| |||||||| || Sbjct 2273 ATGAGCCGCTTGGCGTCGAAGACGGTGTTGGCGGGGTTCATGGCCACCTGGTTCTTGGCA 2332 Query 8000 GCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGG-GTCGTTCG 8058 || || ||||| || | || | | || ||||| || || || | |||| || || | Sbjct 2333 GCATCTCCGATGAGCC--TC-TCTGTGTCTGTAAAGGCCACATA-GCTGGGTGTGGTCCT 2388 Query 8059 ATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCACGA 8118 || || |||||||| || || || || || | | | || | || ||||| || || Sbjct 2389 GTTGCCCTGGTCGTTGGCGATGATCTCCACTTTGCCATGCTGGAAAACCCCGACACAAGA 2448 Query 8119 ATACGTTGTTCCTAAATCAATACCGAT 8145 ||| || || || | |||||| || || Sbjct 2449 ATAGGTGGTGCCCAGATCAATGCCAAT 2475 >seq97422 Length=7209 Score = 185 bits (204), Expect = 1e-41 Identities = 368/542 (68%), Gaps = 6/542 (1%) Strand=Plus/Plus Query 7040 GCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAA 7099 || || || || || || ||||| |||||||| | || || || || || || || ||| Sbjct 2886 GCACCATAGGCCACTGCTTCATCAGGGTTAATGCTCTTGTTGAGCTCCTTCCCATTGAAA 2945 Query 7100 TAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATT 7159 | ||| | || | || || || || || || || || || || |||| || || Sbjct 2946 AAGTCCTGCAGCAGCTTCTGGATCTTGGGAATACGAGTGGAACCTCCAACCAGGACAATG 3005 Query 7160 TCATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATA 7219 || | | || | || || ||||| | ||| || || | ||||| ||||| |||| Sbjct 3006 TCGTGGATTTGAGCCTTGTCCATCTTGGCGTCACGGAGAGCCTTTTCCACAGGCTCCAGG 3065 Query 7220 CATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAG 7279 | ||||||| |||| ||| ||||| || || || | |||||| || || ||| Sbjct 3066 GTTCCTCGGAACAGGTCCGCGTTCAGCTCCTCGAATCGGGCCCTGGTAATCGAGGTGTAG 3125 Query 7280 AAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAAC 7339 ||||| || || ||||| | ||||| ||||||||| | | || | | || || | Sbjct 3126 AAATCGACTCCTTCGTACAGAGAATCGATTTCAATGCTGGCCTGGGTGCTGGATGACAGG 3185 Query 7340 GTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAA 7399 || |||||||| | |||||||||||| || | ||||| | || | | ||| || Sbjct 3186 GTGCGCTTTGCCCTCTCACACGCCGTGCGCAGGCGACGCACCGCCCTCTTGTTGTCGCTG 3245 Query 7400 ATATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGT-GTCGA--AGGAGTCTCGAA 7456 || |||||||| | || || || ||||| | ||||| || || | | | | Sbjct 3246 ATTTCTTTCTTGTACTTGCGCTTGAACTCGCCGATGAAGTGGTTGACCATGCGGTT---G 3302 Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 ||||| ||||| || |||||||| || || || || || | ||||| || ||||| || Sbjct 3303 TCGAAGTCTTCTCCTCCCAAGTGGGTGTCGCCTGCTGTGGACTTGACCTCGAAGATGCCG 3362 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 ||||||| | || | || || |||||||| || || ||||||||||| ||||| ||| Sbjct 3363 TCTTCAATAGTCAAGATGGAGACGTCAAACGTGCCGCCGCCCAGGTCAAAGATGAGGACG 3422 Query 7577 TT 7578 || Sbjct 3423 TT 3424 Score = 95.1 bits (104), Expect = 2e-14 Identities = 107/141 (76%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 7595 TTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAA-GACA 7653 || ||||| || |||||||||||||| || || || || || || || ||||||| |||| Sbjct 4329 TTTTTATCCAGGCCGTACGCGATAGCAGCAGCAGTCGGCTCGTTGATGATACGAAGGACA 4388 Query 7654 GTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTA 7713 || || |||| ||| || | |||||||| || || || || || || || || ||||| Sbjct 4389 -TTAAGCCCAGAAATGGTGCCTGCATCTTTGGTGGCCTGGCGCTGAGAGTCATTGAAGTA 4447 Query 7714 GGCCGGGACCGTTACGACCGC 7734 ||| || || || ||||| || Sbjct 4448 GGCAGGCACAGTCACGACTGC 4468 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 632915932474880