Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20steindachneri_20[genbank_20GCA_5F001910785.1_202016-12- 20] 279,232 sequences; 648,011,071 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq95031 203 4e-47 seq270369 102 1e-16 >seq95031 Length=3790 Score = 203 bits (224), Expect = 4e-47 Identities = 650/990 (66%), Gaps = 25/990 (3%) Strand=Plus/Minus Query 105841 CTTCATATCCTTGGACCAAAGACCAATCTTCTTGAGATCATTGACGAGATGCTTGTTGAC 105900 |||||| |||| | ||| || || ||| | | || || |||| ||||| |||||| Sbjct 2650 CTTCATCTCCTCGCTCCACAGCCCTCTCTCCGTCAGGTCTTTGAGCAGATGAGGGTTGAC 2591 Query 105901 AATCACAAACTCTCCCGCGAGGGTTCTTCTCAGATAGATGTTCGTCGTGTAGGGTTCAAA 105960 ||| ||||||||| | |||| || | |||||||| | ||||||| ||| | Sbjct 2590 GATCTGAAACTCTCCGGAGAGGACCCTGCGGGTGTAGATGTTGCTGGTGTAGGCTTCGAT 2531 Query 105961 GCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCATCAAAAG 106020 | | || || || |||| ||| || ||||||||||| || ||||| || |||| || || Sbjct 2530 GGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGCATCGGGGCCAGCAGCAG 2471 Query 106021 ACTGTTACGAAGACCCTTTTCCTTGATGCGTTCCTTGAGAACATCCCAGTC--GTAGTTG 106078 ||||| | | || | ||| ||||| || | | |||||| | |||| Sbjct 2470 GCTGTTCCTCACGCCGTGGATGGCGATCTTCTCCTTCAGCAGCTTCCAGTCCAGCAGTT- 2412 Query 106079 AGCTTGGTTTCACCTTCCCACATATCAAATTGAAGCA-CCCCTTG-GGACGTGGGAGAAC 106136 | | || ||| | |||||||| || | || || | |||||| ||| |||||| | Sbjct 2411 CGGTGGGCTTCTTC-TCCCACATGTCGTACTGCAGGATGCCCTTGCTGAC--GGGAGAGC 2355 Query 106137 CCTCAAATGTCTCATAGGAACCTTGGGCTTCAGCCAATTCACAGCTCGCCTCCAGGGATG 106196 | | | ||||| |||| || | | | |||| || |||||||||||||||| | Sbjct 2354 CTGCGTACGTCTCGTAGGGGCCGAGCTCGGCGGCCAGCTCGCAGCTCGCCTCCAGGGCGG 2295 Query 106197 CGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAATCAAATG 106256 |||| || |||| || ||||| || ||||| | || || || | || || | Sbjct 2294 CGTGGTAGATGGCCTCGAAGATTTGAATATTCAGCAGCTGAGCCTCTTTGCTTTCGAACG 2235 Query 106257 CGTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGT 106316 ||| || | || || ||||||| | |||||| || || | ||||| || |||| Sbjct 2234 GGTAACGCATGAGGATGAAGGCATCCGCCAAACCTTGGACGCCAATTCCAATCGGCCTGT 2175 Query 106317 GTCGCATATTAGACTTTCGCGCAGTCTCAACGGGATAAAAATTTCTGTCAATGACTCGGT 106376 | ||| | || |||||| ||| || ||||| | || | || |||| || Sbjct 2174 GGCGCTTGTTGGACTTTTCCGCTTCGGGCACTGGATAGTAGTTAATTTCGATGATCTTGT 2115 Query 106377 TTAGATTTTTGGTAACAAT--CTTTGTGATTTCATG-AAGTTTTTCATAATCAAAAGTGC 106433 | | ||| ||| || || ||||| ||| ||||||| | | |||||||| | Sbjct 2114 TCAAATTCTTG---ACGATTACTTTGGTCACAGATGCCAGTTTTTTAAAGTCAAAAGTCC 2058 Query 106434 GAGTCTCTTCATTGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCT 106493 | ||| |||| ||| | || || ||||| |||| ||| || || || || Sbjct 2057 G---CTCCGGGGTGACGTACATGTTGAGCGCAATTGAGGCCAGATTACACACCGCTACCT 2001 Query 106494 CATCCTTATCTGTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCA 106553 |||| | |||||||| | |||||||| || | |||| ||| || || |||| Sbjct 2000 CATCGTGGCTGGTGTACTCGATGATTTCTGTGCAGAGGTTGCTGGACTTGATGGTGCCCA 1941 Query 106554 AATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCG 106613 ||||| |||||| ||||| ||||||| || || ||||| |||||||| ||||| || | Sbjct 1940 GATTCTGTTGGTTGCTCTTCCTGTTGCAGGCGTCTTTGTACAGCATGTATGGCGTACCAG 1881 Query 106614 TCTCCGTCTGTGACTTGAGAATTGCCTTCCAC-ACATCGGCGGCTGGTACAATGGCGTTG 106672 | || ||||| |||| || || || | |||| || | | | || || | | ||| Sbjct 1880 TTTCTGTCTGGGACTCGATAACGGCGTGCCACAACTGCTGAGCCT-TCACCACGCGCTTG 1822 Query 106673 GCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGC-GTC 106731 | |||| | ||| || |||||||| ||| |||||||| ||| | || || Sbjct 1821 AACTTCCCCTGCTTCTCATAGGAGGTGTAGAGCTTTTCGAACTCCTC-CCCCCAGCACTC 1763 Query 106732 GGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCCT--CCTCAACC 106789 | | ||||| || || ||||| | |||||||| | || | | ||| || Sbjct 1762 GTCCAACCCTGGGCACTCGTTGGGACACATCAGAGACCA--GTCCTCGTTGCTCTCCACT 1705 Query 106790 CGCTTCATGAAAAGGTCTGGAATCCACAGG 106819 | ||||||||| ||||| || ||||||||| Sbjct 1704 CTCTTCATGAACAGGTCGGGGATCCACAGG 1675 >seq270369 Length=13262 Score = 102 bits (112), Expect = 1e-16 Identities = 116/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 106492 CTCATCCTTATCTGTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCC 106551 |||||| ||| ||||||||||| || || || |||| ||| || || || || Sbjct 6555 CTCATCTTTACTTGTGTACTCTACGATCTCCGTGCACAGATTGCTGGATTTGATGGTGCC 6614 Query 106552 CAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCC 106611 || ||||| ||||| ||||| ||||||| || ||||||||||||||||| ||||| || Sbjct 6615 CAGATTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTATGGCGTGCC 6674 Query 106612 CGTCTCCGTCTGTGACTTGAGAATTGCCTTCCACAC 106647 || || ||||| || | || || || | |||||| Sbjct 6675 GGTTTCGGTCTGCGATTCGATGATGGCGTACCACAC 6710 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 587921531015680