Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20steindachneri_20[genbank_20GCA_5F001910785.1_202016-12- 20] 279,232 sequences; 648,011,071 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq97422 104 2e-16 seq43135 93.3 3e-13 >seq97422 Length=7209 Score = 104 bits (114), Expect = 2e-16 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457 ||||||| | ||||| || || || || |||||||| || || || || || ||||||| Sbjct 4470 ATGCAGTCGTGACTGTGCCTGCCTACTTCAATGACTCTCAGCGCCAGGCCACCAAAGATG 4411 Query 550458 CTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCAC 550517 | || ||| |||| |||||||| |||||||| ||||| || || ||||||||||| Sbjct 4410 CAGGCACCATTTCTGGGCTTAATGTCCTTCGTATCATCAACGAGCCGACTGCTGCTGCTA 4351 Query 550518 TTGCATATGGACTTGATAAA 550537 | || || || || |||||| Sbjct 4350 TCGCGTACGGCCTGGATAAA 4331 >seq43135 Length=3723 Score = 93.3 bits (102), Expect = 3e-13 Identities = 318/493 (65%), Gaps = 2/493 (0%) Strand=Plus/Minus Query 552093 AAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGGTGGATCTACAAGAATTCCT 552152 ||| | || || ||||| | ||||| ||||| || || || || || |||||||| || Sbjct 1521 AAGCTGGACAAGTCCAAGATCCATGAGATTGTCCTGGTCGGCGGCTCCACAAGAATCCCC 1462 Query 552153 AAAATTCGCGAAATGTTA-AGTTCTTATTTCAATGGTAAAAAATTAAATGAAAGTGTTAA 552211 ||||| | | | || || | | ||| || || | | || | || | || | || Sbjct 1461 AAAATCCAGAAGCTCTTGCAGGACCTTTTT-AACGGCAGAGAACTGAACAAGAGCATCAA 1403 Query 552212 TCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCTTTCTGGACAAAC 552271 |||||||| ||||| || || ||||| || | || || || || || || | || Sbjct 1402 CCCAGATGAAGCTGTGGCGTACGGTGCAGCGGTCCAGGCTGCCATCCTCATGGGCGACAC 1343 Query 552272 TGATGAAAAACTACAAAATATTGTACTTGTAGATGTTACTCCTCTATCTCTTGGTTTAGA 552331 | || || | || || | | || | || || |||| || ||||| || | || Sbjct 1342 TTCAGAGAACGTCCAGGATCTGCTGCTGCTGGACGTGGCTCCCCTGTCTCTGGGCATCGA 1283 Query 552332 AACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTACTATTCCTTGTAAAAA 552391 || || || || ||||||| ||| ||| | |||| || || || || | || | Sbjct 1282 GACCGTAGGCGGAGTTATGACACCTCTAATCAAACGAAACACCACCATCCCCTCCAAGCA 1223 Query 552392 ATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCTGTTACAATTCAAATTTTTGA 552451 | | | || || |||||||| || ||||| | | ||| ||||| | | || Sbjct 1222 GACCCAGATCTTCTCCACGTATTCGGACAATCAGCCAGGTGTGCTGATTCAGGTGTACGA 1163 Query 552452 AGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTACTTTTAATTTAGAAGGTAT 552511 ||||| ||| | || || || || || | | || | ||| | | | |||||| Sbjct 1162 GGGAGAGAGAGCCATGACCAAGGACAACAACCTCTTGGGCAAGTTTGAGCTTGCAGGTAT 1103 Query 552512 TCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCCAATGG 552571 ||||||||||| || || ||||| || | || || || ||||| || || ||||| || Sbjct 1102 CCCTCCTGCTCCCCGAGGCGTACCACAGGTGGAGGTCACCTTCGACATAGACGCCAACGG 1043 Query 552572 AATTTTGAATGTG 552584 ||| |||| ||| Sbjct 1042 CATTCTGAACGTG 1030 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4014528952503680