Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20steindachneri_20[genbank_20GCA_5F001910785.1_202016-12- 20] 279,232 sequences; 648,011,071 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq247423 174 1e-38 seq30452 122 7e-23 >seq247423 Length=3941 Score = 174 bits (192), Expect = 1e-38 Identities = 143/174 (82%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 29869 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 29928 || || |||| ||| || |||||||| ||||| || | ||||||||||| || || || Sbjct 2489 AGTCCTGTGATGTGTGCGATCATGTAGGTGAGAAGTGCATAGCTGGCGATATTGAAAGGC 2430 Query 29929 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 29988 |||||||| ||||| || || || | |||||||||||||||||| ||||| ||||||| | Sbjct 2429 ACCCCGAGACCCATATCACCAGAGCGCTGGTAGAGCTGACACGACAGCTCGCCGTCGCAC 2370 Query 29989 ACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCT 30042 ||||| |||||||||| ||||||||| || || |||||||||||| || |||| Sbjct 2369 ACGTAGAACTGACACAGGGTGTGGCAGGGTGGCAGAGCCATGAGGGGCAGGTCT 2316 Score = 136 bits (150), Expect = 3e-27 Identities = 136/175 (78%), Gaps = 1/175 (1%) Strand=Plus/Minus Query 30150 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30209 ||||| |||||||| || || || |||||||||||||| || ||||| ||||||||||| Sbjct 489 CATGTTTGTGTACTCGGCCCCAAAGTGCCTCCACTGGAAACCATACACGGGTCCCAGGTC 430 Query 30210 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 30269 || || || | | ||||||| ||||||| |||| | ||| || |||||||| Sbjct 429 GCCTTCCTCTCGATCTGTGAAGCCCAGGTTGTCCAGGAAGTTCCGGGACCCATTGGCGTC 370 Query 30270 CCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGA-CCCTCTGAC 30323 ||| ||||| ||||| ||| | |||||||| |||| |||||| || |||| |||| Sbjct 369 CCAAATCTTCACCCCTTTCGCTGAGAGCTCCTTGGCGTTTGTTGATCCCTGTGAC 315 >seq30452 Length=9370 Score = 122 bits (134), Expect = 7e-23 Identities = 88/102 (86%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 112108 TCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGGATGGAG 112167 |||||||||||||| | ||| ||||||| |||||||||| ||||| || |||||||| Sbjct 1744 TCCCTGCTGAGGACAATGTTGATCCTGTTGTTCAGAGGTCTGTTCTTCTCTGGGATGGAA 1803 Query 112168 AACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 112209 ||||| || ||||| ||||| ||||||||||||||||||||| Sbjct 1804 AACCATGTTTTTCTGCCCATGATCACCACGTTCTGCTTGCCT 1845 Score = 84.2 bits (92), Expect = 2e-11 Identities = 61/71 (86%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 112275 CCACGGCAGATCTCCGTTGTTCCCGATGCCCATGTCTGGACACACGGCCACGATACCGTT 112334 ||| ||||| | ||| || ||||||||||||| ||| |||||||| ||||||||| |||| Sbjct 5659 CCAGGGCAGGTTTCCATTATTCCCGATGCCCAGGTCCGGACACACCGCCACGATAGCGTT 5718 Query 112335 CAGAATGAGGG 112345 ||||||| ||| Sbjct 5719 CAGAATGCGGG 5729 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 407227017100736