Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20steindachneri_20[genbank_20GCA_5F001910785.1_202016-12- 20] 279,232 sequences; 648,011,071 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq95031 435 6e-117 seq275712 197 3e-45 seq251026 185 2e-41 seq270369 102 2e-16 seq142386 95.1 2e-14 seq12671 91.5 3e-13 seq103925 89.7 1e-12 seq25939 87.8 3e-12 >seq95031 Length=3790 Score = 435 bits (482), Expect = 6e-117 Identities = 1052/1568 (67%), Gaps = 42/1568 (3%) Strand=Plus/Minus Query 212858 CATGTCCTCGTTCCAGAGGCCCCTGGTCTCCAGGCACTTGACCAGGTGAGGGTTGACTAT 212917 ||| |||||| |||| || || || | |||| |||| ||| ||||||||||| || Sbjct 2647 CATCTCCTCGCTCCACAGCCCTCTCTCCGTCAGGTCTTTGAGCAGATGAGGGTTGACGAT 2588 Query 212918 CTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTGTAGGGCTCGATGCT 212977 ||| || || || ||||| ||||| | ||| | ||| ||||||| |||||| Sbjct 2587 CTGAAACTCTCCGGAGAGGACCCTGCGGGTGTAGATGTTGCTGGTGTAGGCTTCGATGGA 2528 Query 212978 CTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGGAGCCACCAGGAGACT 213037 ||||||||| ||||| ||||| || ||| ||| |||||||| || |||| ||| || || Sbjct 2527 CTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGCATCGGGGCCAGCAGCAGGCT 2468 Query 213038 GTTCCTCACTCCGTGCTCGCCGATGAGGCGCC----GAAGCTCTGCCCAGTCCCATCTGC 213093 ||||||||| ||||| | |||| | || | |||| ||||||| Sbjct 2467 GTTCCTCACGCCGTGGATGGCGATCTT-CTCCTTCAGCAGCTT---CCAGTCC------- 2419 Query 213094 CAGACAGGTCCTCGTCCTTCACGTTCCACATGTCAAACTGCAAGATGCCTTTGCTCACGG 213153 || ||| || | |||| | ||||||||| |||||| |||||| ||||| |||| Sbjct 2418 -AG-CAGTTCGGTGGGCTTCTTCTCCCACATGTCGTACTGCAGGATGCCCTTGCTGACGG 2361 Query 213154 GGCTGCCCTGGTAAGAGGAGTAGGGGCCATGCTCCTTGGCCAGCTCGCAGGACGCCTGCA 213213 | ||| ||| | ||||||||| |||| ||||||||||||| ||||| || Sbjct 2360 GAGAGCCTGCGTACGTCTCGTAGGGGCCGAGCTCGGCGGCCAGCTCGCAGCTCGCCTCCA 2301 Query 213214 GGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTGAGCTTCTTGGCCTCTGGGGACG 213273 |||| |||| |||||||| || || || | | || ||| || |||||| | Sbjct 2300 GGGCGGCGTGGTAGATGGCCTCGAAGATTTGAATATTCAGCAGCTGAGCCTCTTTGCTTT 2241 Query 213274 TGAA-GGGCATCATCATGCGTTGGAACACATCAGCCAGCCCCTGGACCCCGATGCCGATG 213332 ||| ||| | | |||| | ||| |||| |||| || ||||| || || || || Sbjct 2240 CGAACGGGTAACG-CATGAGGATGAAGGCATCCGCCAAACCTTGGACGCCAATTCCAATC 2182 Query 213333 GGTCTGTGTCTCAGGTTAGACTTGGAGCACTCCTCCAAGGGGTAAAAGTTGCAGTCGATG 213392 || ||||| | | ||| ||||| || || || || |||| |||||| Sbjct 2181 GGCCTGTGGCGCTTGTTGGACTTTTCCGCTTCGGGCACTGGATAGTAGTTAATTTCGATG 2122 Query 213393 ATCTTGTTGAGGTTGCGGGTGGCCACTTTGGTGACATGGGCCAGGTACTCGTGATTGAAC 213452 |||||||| | || | | |||||||| ||| ||||| | | | | || Sbjct 2121 ATCTTGTTCAAATTCTTGACGATTACTTTGGTCACAGATGCCAGTTTTTTAA-AGTCAAA 2063 Query 213453 ACGTAGCCCCCGTCCTGCACAAACTCAGGCAGGGCGATGCTGGCCAGGTTGCAAACGGCC 213512 | || | ||| || || || || || || |||||| || || || || Sbjct 2062 A-GTCCGCTCCGGGGTG-ACGTACATGTTGAGCGCAATTGAGGCCAGATTACACACCGCT 2005 Query 213513 ACCTCCTGAGAGTCTG-TGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGT 213571 ||||| | | | ||| ||||||| ||||| || ||||| ||||||||| | |||||| Sbjct 2004 ACCTCATC-GTGGCTGGTGTACTCGATGATTTCTGTGCAGAGGTTGCTGGACTTGATGGT 1946 Query 213572 GCCCAGGTTCTGGTGGTTTGACTTTGCGTTGGCAGAATCCTTGTAGAGCATGTAGGGGGA 213631 |||||| ||||| ||||| ||| |||| | || ||||| |||||||| || | Sbjct 1945 GCCCAGATTCTGTTGGTTGCTCTTCCTGTTGCAGGCGTCTTTGTACAGCATGTATGGCGT 1886 Query 213632 CCCGGTCTCTAGCTGGGACACCAGTATCTGGCT-CCAGAGGTACCTGGCCTTGACCACCC 213690 || || ||| ||||||| | | || | | | ||| | | | ||||| ||||| | Sbjct 1885 ACCAGTTTCTGTCTGGGACTCGA-TAACGGCGTGCCACAACTGCTGAGCCTTCACCACGC 1827 Query 213691 GCCTGACAGCTCCGGGCGTAGCCTCGTACTGTTCGTAGAGCTCGTTGAATTCGTGGCCCC 213750 || ||| || || | | | | | || |||||||| | ||| || | |||| Sbjct 1826 GCTTGAACTTCCCCTGCTTCTCATAGGAG-GT--GTAGAGCTTTTCGAACTCCTCCCCCC 1770 Query 213751 AGACCCTGTCCAGTCCCGGACAGGATGCGGGACACATGAGGCTCCAGTCCCCGTCATCTC 213810 || | ||||| || || || ||||||||| || ||||||| ||| ||| Sbjct 1769 AGCACTCGTCCAACCCTGGGCACTCGTTGGGACACATCAGAGACCAGTCCTCGTTG-CTC 1711 Query 213811 TG-ACTCTCTGCATGAACAGGTCCGGGACCCACAGCGCGGTGAACAGGTCCCTGGTCCTC 213869 | ||||||| |||||||||||| |||| |||||| || ||| |||||||||| ||| Sbjct 1710 TCCACTCTCTTCATGAACAGGTCGGGGATCCACAGGCCGTAGAAAAGGTCCCTGGCTCTC 1651 Query 213870 CTCTCGTCCACTCCAGAGTTTTTGCGCAGATCTAGAAAGTCAAAGATGTCCGCGTGCCAC 213929 ||| ||| ||| | ||| || || || || |||||||| | ||| |||||||| Sbjct 1650 TGCTCCTCCTTTCCGGTGTTCTTCTTTAGCTCCAGGAAGTCAAACACGTCGGCGTGCCAG 1591 Query 213930 GGCTCCATGTAGATGGCAAAGGCGCCCGGCCTC---TTGCCGCCCTGGTCCACCAGCCTG 213986 ||||||| ||| ||||| ||||| || || ||| |||||||||||||| || | Sbjct 1590 GGCTCCAGGTACATGGCGAAGGCTCCTGGTCTCTTGTTGCCGCCCTGGTCGACGTAACGT 1531 Query 213987 GCCACCATGTTGAAGATGCGCAGGACGGGTACCAGCCCGTTGGACTGTCCGTTGGTTCCC 214046 ||| ||||| | | | ||| | ||| || | ||||||||| | |||||||| || Sbjct 1530 GCCGTGTTGTTGTAAACTCTCAGCATGGGGACGACCCCGTTGGAGTTGCCGTTGGTGCCG 1471 Query 214047 GCTATATACGAGCCGGAGGCCCTCAGGTTGCTCATGGAGAGCCCTATGCCACCGGCGTAC 214106 || || || || | | || | | ||| || | | || || || ||||| | Sbjct 1470 GCGATGTAGCTCCCCGTTGTTCTGATGCAGCTTATCGCCACACCAATTCCCCCGGCTGAT 1411 Query 214107 TTGGAGATCATGGCGCAGCGCCTCACAGTCTCCATGATGCCGGCCATGCTGTCATCTGTG 214166 |||||||| | |||||| || ||| || || ||||| | |||||||| ||| | Sbjct 1410 TTGGAGATGAGGGCGCATTGCTTCAGCGTGTCGTAAATGCCTTCGATGCTGTCGTCTTTC 1351 Query 214167 AGGTTCAGCAAGAAGCAGCTCGAGAGCTGGGGCCTGGACGAGCCAGAGTTGAAAAGCGTG 214226 | | |||| ||||||||| || ||||| |||||| | || | |||||| |||||| Sbjct 1350 ATGGCGAGCAGGAAGCAGCTGGACAGCTGTGGCCTGTTGGTTCCTGCGTTGAAGAGCGTG 1291 Query 214227 GGGCTGGCATGGATCATAAACTTGTTAGAGAGGAGCCTGTAGGTCTCCAGGACTGAGGGG 214286 ||| ||| ||| | | |||| | || || || |||| ||||| | | ||| | | Sbjct 1290 GGGGAGGCGTGGGTGAACCACTTCTCTGACAGCAGGTTGTACGTCTCAATGGCTGCGTCG 1231 Query 214287 ATGTCGTGCTTGTGGATCTGTAGAGCGCAC-CTCATCAGCATGTGCTGGGGCCTCTCTAT 214345 ||||| |||||||||| | | ||| ||||| ||||||||||| || | ||| Sbjct 1230 ATGTCCATCTTGTGGATCCCGA-CGGACACTCTCATGAGCATGTGCTGCGGTCGCTC--- 1175 Query 214346 GGGTCCTTT---GGGGCCCTTGAGCAGGTAGGAGCGCTCCAGAGTCTTGAACCCAAAGTA 214402 || |||| | | ||| | ||||||||| ||||||||||||||||| || ||| | Sbjct 1174 GGCCACTTTGCCGTTGATCTTCAACAGGTAGGACCGCTCCAGAGTCTTGAAGCCGAAGAA 1115 Query 214403 GGAGTAGG 214410 | ||||| Sbjct 1114 GTTGTAGG 1107 >seq275712 Length=2878 Score = 197 bits (218), Expect = 3e-45 Identities = 186/237 (78%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 241391 TGACAGCCTTGGCACATGTGCCACAGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCCGC 241450 |||||||| || || ||| |||||||| ||||||||| || || ||||||||||| Sbjct 2387 TGACAGCCGCTGCTCACGTGTGTCAGGACCTTCTGTTTGAGCTGAGCGACCTGGTCCCGG 2328 Query 241451 AGAACGGACGCGGTATTGGACAGTCCTGCGTTGTCAGACTTGAGCACCTTCACTTTCTCC 241510 || || || || || ||||| || || ||||||| || ||| ||||||| || ||| Sbjct 2327 AGCACCGAGGCCGTGTTGGAGAGCCCCACGTTGTCGTTTTTCAGCCCCTTCACCTTGTCC 2268 Query 241511 TCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGTTC 241570 |||||||| |||||||| ||||| ||||||| |||||||| || ||||||| |||||| Sbjct 2267 TCCAGCCGGGCGATGCGCTCCAGCTTGCGCCTCCGGCATTTAGTCGCTGCCAGCCGGTTC 2208 Query 241571 CGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCGATCGGAGAC 241627 | || ||||| | |||||||||||||| ||||| | ||||| || ||| |||||| Sbjct 2207 CTCAGCCTCTTCCTCTCCGCCTTGATGCGCTCCTGATTCTCCAAGTTGATGGGAGAC 2151 >seq251026 Length=3772 Score = 185 bits (204), Expect = 2e-41 Identities = 180/231 (78%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 241403 CACATGTGCCACAGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCCGCAGAACGGACGCG 241462 |||||||| || ||| | |||||||||||| |||||||| |||||||| || ||||| Sbjct 2524 CACATGTGTCAT--GACTTTCTGTTTGAGTTGTGCCACCTGATCCCGCAGCACTGACGCC 2467 Query 241463 GTATTGGACAGTCCTGCGTTGTCAGACTTGAGCACCTTCACTTTCTCCTCCAGCCGCGCG 241522 || ||||||||||| |||||||| | ||| ||||| ||||| || |||||||| || | Sbjct 2466 GTGTTGGACAGTCCCGCGTTGTCTGTCTTCAGCACTTTCACCTTGTCCTCCAGGCGAGAA 2407 Query 241523 ATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTA 241582 ||||| ||||| ||||||| || || |||| ||||| | ||||||| || | ||| Sbjct 2406 ATGCGCTCCAGCTTGCGCCTCCGACACTTGGACGCTGCGAGCCGGTTCCTCAGCCGCTTG 2347 Query 241583 CGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCGATCGGAGACTTGGGT 241633 || |||| || ||||| ||||||| ||||| ||||| || ||| | ||| Sbjct 2346 CGCTCCGTTTTCATGCGGTCCTGGTTCTCCAGATCGATGGGGGACATCGGT 2296 Score = 93.3 bits (102), Expect = 8e-14 Identities = 89/115 (77%), Gaps = 8/115 (7%) Strand=Plus/Minus Query 238926 TCTGTTTGAGTTGGGCCACCCGGTCCCGCAGAACGGACGCGGTATTGGACAGACCCGCGT 238985 ||||||||||||| |||||| | |||||||| || ||||| || |||||||| ||||||| Sbjct 2507 TCTGTTTGAGTTGTGCCACCTGATCCCGCAGCACTGACGCCGTGTTGGACAGTCCCGCGT 2448 Query 238986 TATCAGACTTGAGCA--------TTCTCCTCCAGCCGCGCGATGCGTTCCAGCTT 239032 | || | ||| |||| || |||||||| || | ||||| |||||||| Sbjct 2447 TGTCTGTCTTCAGCACTTTCACCTTGTCCTCCAGGCGAGAAATGCGCTCCAGCTT 2393 >seq270369 Length=13262 Score = 102 bits (112), Expect = 2e-16 Identities = 104/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 212918 CTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTGTAGGGCTCGATGCT 212977 ||| || || || ||||||||||| | ||| | ||| ||||| | ||| ||| Sbjct 5605 CTGAAACTCTCCCGAGAGCACCCTGCGGGTGTAGATGTTGCTGGTGTAAGCCTCAATGGA 5664 Query 212978 CTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGGAGCCACCAGGAGACT 213037 ||||||||| ||||| |||||||| ||| |||||||||||||| |||| || ||||| Sbjct 5665 CTCGTTGTTGCCCAGGATCTGTGCGGTGGAAGCTGTGGGCATGGGGGCCAAGAGCAGACT 5724 Query 213038 GTTCCTCACTCCGTGC 213053 ||||||||| || ||| Sbjct 5725 GTTCCTCACACCATGC 5740 Score = 93.3 bits (102), Expect = 8e-14 Identities = 89/114 (78%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 213527 TGTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTG 213586 ||||||||| | |||||| |||||||| |||||| || |||||||||||| ||||| || Sbjct 6567 TGTGTACTCTACGATCTCCGTGCACAGATTGCTGGATTTGATGGTGCCCAGATTCTGCTG 6626 Query 213587 GTTTGACTTTGCGTTGGCAGAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTC 213640 ||| ||| |||| | ||||||||||||||||| || | ||||| || Sbjct 6627 GTTGCTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTATGGCGTGCCGGTTTC 6680 >seq142386 Length=10294 Score = 95.1 bits (104), Expect = 2e-14 Identities = 151/215 (70%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 241415 AGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCCGCAGAACGGAC--GCGGTATTGGACA 241472 ||||| | |||||| || || ||||||||||||||||| | ||| || || | || Sbjct 1738 AGGACTTTCTGTTTCAGCTGAGCCACCTGGTCCCGCAGCA--GACTGGCCGTGGACGCCA 1681 Query 241473 GTCCTGCGTTGTCAGACTTGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCA 241532 | | | ||||| ||| || ||| || || |||||||||| | |||||| |||| Sbjct 1680 GGTCCGTGTTGTGGCTCTTCAGAGACTTGACCTTGTCCTCCAGCCTGGAGATGCGCTCCA 1621 Query 241533 GTTTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCT 241592 |||||||| || || |||| ||||| | ||||||| ||| ||||| | || || | Sbjct 1620 GTTTGCGCATCCGACACTTGGATGCTGCGATCCGGTTCCTGAGCCTCTTCCTCTCGGCTT 1561 Query 241593 TGATGCGTTCCTGGTCCTCCATGTCGATCGGAGAC 241627 | || ||||| || |||||||| || ||| Sbjct 1560 TCATTGACTCCTGACAGTCAATGTCGATGGGGGAC 1526 >seq12671 Length=3021 Score = 91.5 bits (100), Expect = 3e-13 Identities = 98/130 (75%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 241498 CTTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGC 241557 ||| || || ||||||||||| | ||| | ||||| || | | |||||| |||| || Sbjct 2087 CTTGACCTTGTCCTCCAGCCGAGAGATCCTCTCCAGCTTTCTCTTGCGGCACTTGGACGC 2146 Query 241558 TGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTC 241617 || | ||||| || || | || | |||||||||||||| ||||||| |||||||| Sbjct 2147 GGCTATCCGGTTGCGCAGCTTTTTCCTCTCCGCCTTGATGCGCTCCTGGTTGTCCATGTC 2206 Query 241618 GATCGGAGAC 241627 ||| |||||| Sbjct 2207 GATGGGAGAC 2216 >seq103925 Length=3126 Score = 89.7 bits (98), Expect = 1e-12 Identities = 148/214 (69%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 241414 CAGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCCGCAGAACGGACGCGGTATTGGACAG 241473 || ||||| ||| ||||| | |||| || ||||||||| ||| |||| | ||| Sbjct 1083 CATGACCTTCTGCTTGAGCAGCGCCAGCTCGTCCCGCAGCACGTTGGCGGAAGACACCAG 1142 Query 241474 TCCTGCGTTGTCAGACTTGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAG 241533 | | ||| | ||| || |||||| ||||||||||||| ||| | ||||| Sbjct 1143 CTCCGTGTTTTGGTTCTTCAGGTTCTTCACCCGGTCCTCCAGCCGCGAGATCCTCTCCAG 1202 Query 241534 TTTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTT 241593 || | | ||||| |||| || |||| ||||||| | | ||| | |||||||| Sbjct 1203 CTTCCTCTTCCGGCACTTGGACGCGGCCACCCGGTTCCTCATGCGCTTCCTCTCCGCCTT 1262 Query 241594 GATGCGTTCCTGGTCCTCCATGTCGATCGGAGAC 241627 |||||| ||||| |||||||| ||| || ||| Sbjct 1263 GATGCGCTCCTGTCTCTCCATGTTGATGGGGGAC 1296 >seq25939 Length=11470 Score = 87.8 bits (96), Expect = 3e-12 Identities = 92/121 (76%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 39070 CGGGGAACCTCATCAGCTCGGCCGGTCTCCCGCTACCTTGCAGAGCCTCCACCAGCTTTT 39129 |||||||||||||| ||| || ||||| ||||| ||||||| || ||||| || | Sbjct 11118 CGGGGAACCTCATCCCCTCTGCGGGTCTGCCGCTCTGCTGCAGAGTCTGAACCAGTTTCT 11177 Query 39130 GACACTGTGTGGTCTTTCCAGCCCTGTCCACTCCTTCCAATACCACAAGAGCTCCCCTCT 39189 ||||||| || || || ||||| |||| ||||| |||| || | || ||||| |||| Sbjct 11178 GACACTGAGTAGTTTTCCCAGCTTTGTCGACTCCCTCCAGCACGATGAGCGCTCCTCTCT 11237 Query 39190 T 39190 | Sbjct 11238 T 11238 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928281377914880