Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20steindachneri_20[genbank_20GCA_5F001910785.1_202016-12- 20] 279,232 sequences; 648,011,071 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq95031 233 4e-56 seq270369 91.5 3e-13 >seq95031 Length=3790 Score = 233 bits (258), Expect = 4e-56 Identities = 630/946 (67%), Gaps = 27/946 (3%) Strand=Plus/Minus Query 221713 GGCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAG 221772 |||||| |||||||| || ||||| || | | |||| |||| ||||| ||||| ||||| Sbjct 2023 GGCCAGATTACACACCGCTACCTCATCGTGGCTGGTGTACTCGATGATTTCTGTGCAGAG 1964 Query 221773 GTTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTT 221832 ||||||| |||||||||| ||||| | | || || ||| | ||| ||||| || Sbjct 1963 GTTGCTGGACTTGATGGTGCCCAGATTCTGTTGGTTGCTCTTCCTGTTGCAGGCGTCTTT 1904 Query 221833 GTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTC 221892 ||| ||||| | || ||||| || ||| | | | | || || ||| | | Sbjct 1903 GTACAGCATGTATGGCGTACCAGTTTCTGTCTGGGACTCGATAACGGCGTGCCACAACTG 1844 Query 221893 TCTG-GCGCTCACCGTCCTCTTGA-CTGCACCCTCGGTCTTTTCATACCCGGTATAGAGC 221950 ||| || ||||| | ||||| || | |||| ||| ||||| ||| |||||| Sbjct 1843 -CTGAGCCTTCACCACGCGCTTGAACTTC-CCCTG---CTTCTCATAGGAGGTGTAGAGC 1789 Query 221951 ATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATCAGA 222010 | || |||| || || | |||||||| ||||| ||| | ||||||||||||| Sbjct 1788 TTTTCGAACTCCTCCCCCCAGCACTCGTCCAACCCTGGGCACTCGTTGGGACACATCAGA 1729 Query 222011 CTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGA 222070 ||||| || |||| | || |||| |||||| ||||| ||||||||||| | | Sbjct 1728 GACCAGTCCTCGTTGCTCTCCACTCTCTTCATGAACAGGTCGGGGATCCACAGGCCGTAG 1669 Query 222071 AAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCA 222130 || || || |||| | |||||||||| ||| |||| ||| | || |||| || ||| Sbjct 1668 AAAAGGTCCCTGGCTCTCTGCTCCTCCTTTCCGGTGTTCTTCTTTAGCTCCAGGAAGTCA 1609 Query 222131 AAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGCCA 222190 || | ||| |||||||| |||||||| || | ||| | || || |||| ||||||||| Sbjct 1608 AACACGTCGGCGTGCCAGGGCTCCAGGTACATGGCGAAGGCTCCTGGTCTCTTGTTGCCG 1549 Query 222191 CCCTGATCCACCATCCTCTCCAGAGCGTTGAAGATGCGAAGGGTCGGTACCAGTCCGTTG 222250 ||||| || || | || |||| | | | || | || || | |||||| Sbjct 1548 CCCTGGTCGACGTAACGTGCCGTGTTGTTGTAAACTCTCAGCATGGGGACGACCCCGTTG 1489 Query 222251 GATCGACCGTTGGTGCCCTTAATGTACGCACCGCCG--GCCCT----CAGGTTACTGGCA 222304 || ||||||||||| ||||| || || ||| | || ||| ||| | || Sbjct 1488 GAGTTGCCGTTGGTGCCGGCGATGTA-GCTCC-CCGTTGTTCTGATGCAGCTTA-TCGC- 1433 Query 222305 GACATGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCATG 222364 || || || || ||||| ||| ||||| | |||||| ||| || ||||| Sbjct 1432 --CACACCAATTCCCCCGGCTGATTTGGAGATGAGGGCGCATTGCTTCAGCGTGTCGTAA 1375 Query 222365 ATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGATTTG 222424 ||||| || || ||| || || | | ||||| || || |||| ||| | || Sbjct 1374 ATGCCTTCGATGCTGTCGTCTTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGTGGCCTG 1315 Query 222425 GTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACATCAGA 222484 ||| | ||||| || |||||||| |||||| || || | | |||| ||| Sbjct 1314 TTGGTTCCTGCGTTGAAGAGCGTGGGGGAGGCGTGGGTGAACCACTTCTCTGACAGCAGG 1255 Query 222485 TCGTACGTCTCTACGACTCTGGCGATGTTGTCCCCGTGAATCTGCATGGCGCATCTCATG 222544 | ||||||||| | | || | |||||| | ||| ||| | || ||||||| Sbjct 1254 TTGTACGTCTCAATGGCTGCGTCGATGTCCATCTTGTGGATCCCGACGGACACTCTCATG 1195 Query 222545 TACATGTACTGGGGCCTCT---CCACAGGACCCTTGGAGCTGGAGAGCAGGTACGATTTT 222601 ||||| ||| || | || |||| || || || || | |||||| || Sbjct 1194 AGCATGTGCTGCGGTCGCTCGGCCACTTTGCCGTT-GATCT--TCAACAGGTAGGACCGC 1138 Query 222602 TCCAGAGTCTTGAACCCAAAGTAGTTG-AGGTCAAAGTCTCTGCCG 222646 |||||||||||||| || ||| ||||| ||| ||| |||||| || Sbjct 1137 TCCAGAGTCTTGAAGCCGAAGAAGTTGTAGGAGAAA-TCTCTGTCG 1093 Score = 100 bits (110), Expect = 5e-16 Identities = 132/183 (72%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 221065 CATCTCGTCCGTCCATAGACCCCTCTCTTCCAGCACCTTGACCATGTGCTTGTTCACCAC 221124 |||||| || |||| || || ||||| ||| | |||| || || ||| || | Sbjct 2647 CATCTCCTCGCTCCACAGCCCTCTCTCCGTCAGGTCTTTGAGCAGATGAGGGTTGACGAT 2588 Query 221125 TTGGAAATCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGAAGTGAACGGTTCGATGCT 221184 || || ||||| ||||| ||||| | ||| | ||| ||| | | ||||||| Sbjct 2587 CTGAAACTCTCCGGAGAGGACCCTGCGGGTGTAGATGTTGCTGGTGTAGGCTTCGATGGA 2528 Query 221185 CTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCATGGGTGCCACCAGCAGACT 221244 ||||||||||||||||||||| || ||| ||| |||||||| || |||| |||||| || Sbjct 2527 CTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGCATCGGGGCCAGCAGCAGGCT 2468 Query 221245 GTT 221247 ||| Sbjct 2467 GTT 2465 >seq270369 Length=13262 Score = 91.5 bits (100), Expect = 3e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 221123 ACTTGGAAATCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGAAGTGAACGGTTCGATG 221182 || || || ||||||||||||||||| | ||| | ||| ||| | | || ||| Sbjct 5603 ACCTGAAACTCTCCCGAGAGCACCCTGCGGGTGTAGATGTTGCTGGTGTAAGCCTCAATG 5662 Query 221183 CTCTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCATGGGTGCCACCAGCAGA 221242 ||||||||||||||||||||| || ||| || ||||||||||| |||| |||||| Sbjct 5663 GACTCGTTGTTGCCCAGGATCTGTGCGGTGGAAGCTGTGGGCATGGGGGCCAAGAGCAGA 5722 Query 221243 CTGTT 221247 ||||| Sbjct 5723 CTGTT 5727 Score = 87.8 bits (96), Expect = 3e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 222040 CATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCAC 222099 ||| || ||||| |||||||||| || ||| || ||||||| || ||||||||| Sbjct 7094 CATAAACAGGTCTGGGATCCACATGGCGAAAAACAGGTCTCTGGCCCTCTGCTCCTCTTT 7153 Query 222100 GCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAAATGTCAGCGTGCCACGGCTCCAGATA 222159 ||| |||| ||| ||| ||||| || ||||| | || |||||||||||||| || Sbjct 7154 ACCGGTGTTCTTCTTCAACTCCAAGAAGTCAAACACATCGAAATGCCACGGCTCCAGGTA 7213 Query 222160 GACGGCCAGAGCGCCGGGTCGCT 222182 || || | || ||||||| || Sbjct 7214 CACAGCGAAGGCCCCGGGTCTCT 7236 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 925602760110080