Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20steindachneri_20[genbank_20GCA_5F001910785.1_202016-12- 20] 279,232 sequences; 648,011,071 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq218088 93.3 3e-13 seq218087 93.3 3e-13 >seq218088 Length=1900 Score = 93.3 bits (102), Expect = 3e-13 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 476032 TGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGAACTTTTAATCTTGAAGG 476091 |||||| || ||| | || || || || |||| || || | ||| | || || Sbjct 755 TGAAGGGGAGAGAGCCATGACCAAGGACAACAACATCCTGGGCAAGTTTGAGCTGACCGG 696 Query 476092 TATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCAAA 476151 |||||| |||||||||||||| || ||||| ||||| || || ||||| |||||||| || Sbjct 695 TATTCCACCTGCTCCCAGAGGTGTCCCTCAGATTGAGGTGACCTTTGACATTGATGCCAA 636 Query 476152 TGGTATTCTTAATGTTACTGC 476172 ||| ||||| ||||| |||| Sbjct 635 TGGCATTCTCAATGTGTCTGC 615 >seq218087 Length=3194 Score = 93.3 bits (102), Expect = 3e-13 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 476032 TGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGAACTTTTAATCTTGAAGG 476091 |||||| || ||| | || || || || |||| || || | ||| | || || Sbjct 1146 TGAAGGGGAGAGAGCCATGACCAAGGACAACAACATCCTGGGCAAGTTTGAGCTGACCGG 1205 Query 476092 TATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCAAA 476151 |||||| |||||||||||||| || ||||| ||||| || || ||||| |||||||| || Sbjct 1206 TATTCCACCTGCTCCCAGAGGTGTCCCTCAGATTGAGGTGACCTTTGACATTGATGCCAA 1265 Query 476152 TGGTATTCTTAATGTTACTGC 476172 ||| ||||| ||||| |||| Sbjct 1266 TGGCATTCTCAATGTGTCTGC 1286 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3256201584686336