Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20steindachneri_20[genbank_20GCA_5F001910785.1_202016-12- 20] 279,232 sequences; 648,011,071 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq95031 203 4e-47 seq270369 111 2e-19 >seq95031 Length=3790 Score = 203 bits (224), Expect = 4e-47 Identities = 650/990 (66%), Gaps = 25/990 (3%) Strand=Plus/Plus Query 75703 CCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAGG--AGGGTGGTCAATGGTCTCTT 75760 ||||||||| || ||||| ||||||||| | || ||| | | || | |||||||| Sbjct 1675 CCTGTGGATCCCCGACCTGTTCATGAAGAGAGTGGAGAGCAACGAGGAC--TGGTCTCTG 1732 Query 75761 TTCTGTCCAGACAAGGCACCAGGTCTCTCCGAC-GCGGTGGGTGAGGAGTTTGAAGCCCT 75819 | ||||| || || ||||| | ||| || | ||| |||||||| ||| || Sbjct 1733 ATGTGTCCCAACGAGTGCCCAGGGTTGGACGAGTGCTGGGGG-GAGGAGTTCGAAAAGCT 1791 Query 75820 CTACACAAAGTATGAAGAGGAGGGTAGAGCCAATGCGACTGTACCAGCCGCCGATGTT-T 75878 |||||| ||||| || |||| | ||| ||| || || | | | ||| | Sbjct 1792 CTACACCTCCTATGAGAAGCAGGGGAAGTTCAA-GCGCGTGGTGAAGGCTCAGCAGTTGT 1850 Query 75879 GGAAGGCTATTCTCAAATCACAGACGGAGACTGGAACACCATATATGCTTTACAAGGATG 75938 || | || || || | || ||||| || ||||| || ||||| ||||| ||||| || | Sbjct 1851 GGCACGCCGTTATCGAGTCCCAGACAGAAACTGGTACGCCATACATGCTGTACAAAGACG 1910 Query 75939 CTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAATCAAGAGCTCAAATCTTTGCA 75998 | || |||| |||||| |||||| ||||| |||| || |||||| | || || |||| Sbjct 1911 CCTGCAACAGGAAGAGCAACCAACAGAATCTGGGCACCATCAAGTCCAGCAACCTCTGCA 1970 Query 75999 CGGAAATTTTAGAGTACACAGATAAGGATGAGACGGCTGTTTGCAATTTGGCATCAATCG 76058 | ||||| | |||||||| | |||||| || || || ||| |||| ||||| | Sbjct 1971 CAGAAATCATCGAGTACACCAGCCACGATGAGGTAGCGGTGTGTAATCTGGCCTCAATTG 2030 Query 76059 CCCTTCCAAAGTATGTCAATGAAGAGACTCGCACTTTTGATTATGAAAAACTT-CATGAA 76117 | || | ||| |||| ||| || |||||||| | | ||||||| ||| Sbjct 2031 CGCTCAACATGTACGTCACCCCGGAG---CGGACTTTTGACTTTAAAAAACTGGCATCTG 2087 Query 76118 ATCACAAAG--ATTGTTACCAAAAATCTAAACCGAGTCATTGACAGAAATTTTTATCCCG 76175 ||||| || || ||| ||| | ||| |||| || | || | ||||| | Sbjct 2088 TGACCAAAGTAATCGT---CAAGAATTTGAACAAGATCATCGAAATTAACTACTATCCAG 2144 Query 76176 TTGAGACTGCGCGAAAGTCTAATATGCGACACAGACCTATTGGTTTGGGTGTTCAAGGTC 76235 | ||| |||||| || | ||| ||||| || ||||| | || || |||||| Sbjct 2145 TGCCCGAAGCGGAAAAGTCCAACAAGCGCCACAGGCCGATTGGAATTGGCGTCCAAGGTT 2204 Query 76236 TCGCGGATGTATTTATTTTGTGCCGCTACGCATTTGATTCAGATGAAGCCAAGGAGATGA 76295 | ||||||| || || | || ||| | || || | || || || | ||| Sbjct 2205 TGGCGGATGCCTTCATCCTCATGCGTTACCCGTTCGAAAGCAAAGAGGCTCAGCTGCTGA 2264 Query 76296 ATGCTCGTATCTTTGAAACCATGTATCACGCATCCCTGGAGGCGAGTTGTGAATTGGCTG 76355 || || ||||| || |||| || ||||| ||||||||||||| || || |||| | Sbjct 2265 ATATTCAAATCTTCGAGGCCATCTACCACGCCGCCCTGGAGGCGAGCTGCGAGCTGGCCG 2324 Query 76356 AAGCCCAAGGTTCCTATGAGACATTTGAGGGTTCTCCCGCGTCC-CAAGGGG-TGCTTCA 76413 | | || |||| ||||| | | || ||||||| || |||||| | || || Sbjct 2325 CCGAGCTCGGCCCCTACGAGACGTACGCAGGCTCTCCCG--TCAGCAAGGGCATCCTGCA 2382 Query 76414 GTTTGATATGTGGGAAGGTGAAACCAAGCTCAACTAC--GACTGGGATGTTCTCAAGGAA 76471 || || |||||||| | ||| || | | |||| | |||||| | | || ||||| Sbjct 2383 GTACGACATGTGGGA-GAAGAAGCCCACCG-AACTGCTGGACTGGAAGCTGCTGAAGGAG 2440 Query 76472 CGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGATGGCACCAATGCCAACAGCCTCC 76531 ||| | || | | ||||| || || |||| || ||||| || |||||| Sbjct 2441 AAGATCGCCATCCACGGCGTGAGGAACAGCCTGCTGCTGGCCCCGATGCCCACGGCCTCC 2500 Query 76532 ACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCATACACAACAAACATCTACCTG 76591 ||||| || ||| |||| || || || | | | ||| | ||||| | ||||||||| Sbjct 2501 ACCGCCCAGATCCTGGGCAACAACGAGTCCATCGAAGCCTACACCAGCAACATCTACACC 2560 Query 76592 AGAAGAACCCTCGCAGGTGAGTTTGTCATTGTCAACAAGCACCTCGTCAATGACCTCAAG 76651 | || |||| | || |||||| || |||||| || || |||| ||||| | | Sbjct 2561 CGCAGGGTCCTCTCCGGAGAGTTTCAGATCGTCAACCCTCATCTGCTCAAAGACCTGACG 2620 Query 76652 AAGATTGGTCTCTGGTCCAAGGATATGAAG 76681 ||| || || ||| | |||| |||||| Sbjct 2621 GAGAGAGGGCTGTGGAGCGAGGAGATGAAG 2650 >seq270369 Length=13262 Score = 111 bits (122), Expect = 2e-19 Identities = 118/156 (76%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 75875 GTTTGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAACACCATATATGCTTTACAAG 75934 || ||| | || || || |||| ||||| || || || || ||||| ||||| |||||| Sbjct 6710 GTGTGGTACGCCATCATCGAATCGCAGACCGAAACCGGCACGCCATACATGCTCTACAAG 6651 Query 75935 GATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAATCAAGAGCTCAAATCTT 75994 || || || |||| |||||| ||||| ||||| |||| || ||||| | ||||| Sbjct 6650 GACGCCTGCAACAGGAAGAGCAACCAGCAGAATCTGGGCACCATCAAATCCAGCAATCTG 6591 Query 75995 TGCACGGAAATTTTAGAGTACACAGATAAGGATGAG 76030 |||||||| || ||||||||||| ||| |||||| Sbjct 6590 TGCACGGAGATCGTAGAGTACACAAGTAAAGATGAG 6555 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 594487333468160