Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20steindachneri_20[genbank_20GCA_5F001910785.1_202016-12- 20] 279,232 sequences; 648,011,071 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq95031 134 2e-25 seq270369 104 3e-16 seq145694 102 1e-15 seq132806 86.0 8e-11 >seq95031 Length=3790 Score = 134 bits (148), Expect = 2e-25 Identities = 207/290 (71%), Gaps = 18/290 (6%) Strand=Plus/Minus Query 1630062 GCACTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTT 1630121 || |||||||||||| || ||||||| ||| | || | |||||||| |||| ||||| Sbjct 1549 GCCCTGGTCGACGTAACGTGCCGTGTTGTTGTAAACTCTCAGCATGGGGACGACCCCGTT 1490 Query 1630122 GGACTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGC----GCACCTTGTGCGCGG 1630177 ||| | |||||||||||| || | |||| || | | | ||| ||| | ||| Sbjct 1489 GGAGTTGCCGTTGGTGCCGGCGATGTAGCTCCCCGTTGTTCTGATGCAGCTTAT-CGCCA 1431 Query 1630178 CAAAGCCGATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGA 1630237 || || || || ||||| || ||||||||||| ||||| || || ||||||||||| | Sbjct 1430 CA---CCAATTCCCCCGGCTGATTTGGAGATGAGGGCGCATTGCTTCAGCGTGTCGTAAA 1374 Query 1630238 TGCCCTCGATCGAGTCGGCCTTCATGTCCACGAGAAAGCA---CGACGAGTTTTG--CGG 1630292 |||| ||||| |||| | |||||| | | || ||||| ||| || | || | | Sbjct 1373 TGCCTTCGATGCTGTCGTCTTTCATGGCGAGCAGGAAGCAGCTGGAC-AGCTGTGGCCTG 1315 Query 1630293 GTGCGCCGTGCCGGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACT 1630342 || || || ||||||||||||||||| | || ||||||| ||| Sbjct 1314 TTG----GTTCCTGCGTTGAAGAGCGTGGGGGAGGCGTGGGTGAACCACT 1269 Score = 102 bits (112), Expect = 1e-15 Identities = 133/184 (72%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 1627295 TCCACAGGCCGCGCGCCATCAGGCGCTTGACCAGGTGGCGGTTGACCACGGTAAAGTCGC 1627354 ||||||| || | | || ||||| |||| ||| || ||||||| | ||| || | Sbjct 2636 TCCACAGCCCTCTCTCCGTCAGGTCTTTGAGCAGATGAGGGTTGACGATCTGAAACTCTC 2577 Query 1627355 CCGAGAGCACGCGGCGCGTGTAGATGTTGTTGGTGATGACCTCGCACGCCTCGGTGTTGC 1627414 | ||||| || | ||| |||||||||||| ||||| | | ||| | |||| |||||| Sbjct 2576 CGGAGAGGACCCTGCGGGTGTAGATGTTGCTGGTGTAGGCTTCGATGGACTCGTTGTTGC 2517 Query 1627415 CCAGGATCTGCGACGTCGTGGCCGTGGGCATGAGCGCCACGAGGAGCGAGTTGCGCAGGC 1627474 |||||||||| | || | |||||||||||| | |||| || || ||| | || || Sbjct 2516 CCAGGATCTGGGCGGTGGAGGCCGTGGGCATCGGGGCCAGCAGCAGGCTGTTCCTCACGC 2457 Query 1627475 CGTG 1627478 |||| Sbjct 2456 CGTG 2453 >seq270369 Length=13262 Score = 104 bits (114), Expect = 3e-16 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 1628167 ACGATCTCGGTGCACAGGTTGGCCGACGTCGTCGTACCCAGGTTCTGCTGGTTGGTGGTC 1628226 |||||||| |||||||| ||| || | | || ||||| |||||||||||| | || Sbjct 6577 ACGATCTCCGTGCACAGATTGCTGGATTTGATGGTGCCCAGATTCTGCTGGTTGCTCTTC 6636 Query 1628227 AGGTTGACGGCGTCCTTGTGGAGCATGTAGGGCGCGCCGGTCTCGATCTGCGCCGCGACG 1628286 |||| ||||||||||| ||||||||| |||| |||||| ||| |||||| ||| | Sbjct 6637 CTGTTGCAGGCGTCCTTGTAGAGCATGTATGGCGTGCCGGTTTCGGTCTGCGATTCGATG 6696 Query 1628287 ATGGCCGACCAGATCTG 1628303 ||||| |||| | ||| Sbjct 6697 ATGGCGTACCACACCTG 6713 >seq145694 Length=584 Score = 102 bits (112), Expect = 1e-15 Identities = 89/111 (80%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 512050 CGTCATCTCCTTTGACGGCACCTACGTCAACGACCGCCACTTTGCGCTGGCCACCGACAC 512109 |||||||||||||||||| ||||||||||| |||| ||||| || ||| |||||| Sbjct 154 CGTCATCTCCTTTGACGGTTCCTACGTCAACTACCGTCACTTGGCTCTGCTGTGCGACAC 213 Query 512110 CATGTGCTGCCGCGGATCGGTGGTGGCCGTCACGCGCCACGGCTTCAACCG 512160 |||| ||||||||| || ||||| ||||||| |||||| ||||||| Sbjct 214 CATGACCTGCCGCGGTCACCTGATGGCCATCACGCGTCACGGCATCAACCG 264 >seq132806 Length=2397 Score = 86.0 bits (94), Expect = 8e-11 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245 ||||||||||| | |||||||| |||| | ||| | |||||| | ||||||||| Sbjct 1863 GCCGCCAACTATTTGGACATCAAAGGTCTGTTAGATGTCACCTGCAAGACGGTGGCCAAC 1922 Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAA 1592295 ||||| || ||||| | || ||||||||| | ||||| || |||||||| Sbjct 1923 ATGATTAAAGGCAAAACCCCGGAGGAGATCAGGAAGACGTTCAACATCAA 1972 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6084224114436544