Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20steindachneri_20[genbank_20GCA_5F001910785.1_202016-12- 20] 279,232 sequences; 648,011,071 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq146619 145 1e-28 seq198788 136 6e-26 seq95031 116 6e-20 seq270369 93.3 7e-13 seq145694 93.3 7e-13 >seq146619 Length=3725 Score = 145 bits (160), Expect = 1e-28 Identities = 184/258 (71%), Gaps = 14/258 (5%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||| ||||||||||||||||| || ||||||||| ||||||| || ||| ||| Sbjct 1197 TGTACTTGGTCACGGCCTTGGTACCCTCAGACACGGCGTGCTTGGCCAGCTCACCGGGCA 1256 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | |||||| ||||| ||||||||||| | || | ||| ||| |||||||| | Sbjct 1257 GCAGCAGGCGGACGGCCGTCTGGATCTCCCTGGAGGTGATGGTGGAACGCTTGTTGTAGT 1316 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCAT--------------GTCGTT 1485635 | ||||| ||| |||||| | ||||||| || | || | Sbjct 1317 GAGCCAGACGGGAGGCCTCACCGGCGATGCGCTCAAAGATNNNNNNNNNNNNNNNNNNNT 1376 Query 1485636 GACAAACGAGTTCATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTG 1485695 || || ||||||||||| ||| | ||| ||||||||| ||||||||||||||| Sbjct 1377 CACGAAGGAGTTCATGATGCCCATGGCCTTGGAGGAGATGCCGGTGTCGGGGTGCACCTG 1436 Query 1485696 CTTGAGCACCTTGTAAAC 1485713 ||| | ||| ||||| || Sbjct 1437 CTTCATCACTTTGTACAC 1454 >seq198788 Length=1495 Score = 136 bits (150), Expect = 6e-26 Identities = 168/227 (74%), Gaps = 2/227 (1%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||||||||| || ||||| ||||| || |||||||| ||||||| || ||| ||| Sbjct 811 TGTACTTGGTGACAGCTTTGGTTCCCTCGGACACGGCGTGTTTGGCCAGCTCCCCGGGCA 752 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||| | |||||||||||| | ||| | | || ||| ||| ||| || || || | Sbjct 751 GCAGCAGCCTCACGGCGGTCTGCACCTCTCTGCTGGTGATGGTGGAGCGTTTATT-GTAC 693 Query 1485590 -GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTC 1485648 | ||||| ||| ||||||||| |||| || || | || |||||| || || |||||| Sbjct 692 TGAGCCAGCCGGGACGCCTCGGTGGCGATCCGCTCAAACAGGTCGTTCACGAAGGAGTTC 633 Query 1485649 ATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTG 1485695 ||||| ||| | | | |||| |||||| ||| | || ||||| Sbjct 632 ATGATGCTCATGGCTCGGCTGGAAATGCCCGTGTCCGCATGAACCTG 586 >seq95031 Length=3790 Score = 116 bits (128), Expect = 6e-20 Identities = 159/220 (72%), Gaps = 8/220 (4%) Strand=Plus/Minus Query 2073537 GCACTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTT 2073596 || ||||||||| || || ||||||| ||| | || | |||||||| || | ||||| Sbjct 1549 GCCCTGGTCGACGTAACGTGCCGTGTTGTTGTAAACTCTCAGCATGGGGACGACCCCGTT 1490 Query 2073597 GGACTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGC----GCACCTTGTGCGCGG 2073652 ||| | |||||||||||| || | |||| |||| | | ||| ||| | || Sbjct 1489 GGAGTTGCCGTTGGTGCCGGCGATGTAGCTCCCCGTTGTTCTGATGCAGCTTAT---CGC 1433 Query 2073653 CAAAGCCGATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGA 2073712 || | || || || ||||| | ||||||||||| ||||| | |||||||| ||||| | Sbjct 1432 CACA-CCAATTCCCCCGGCTGATTTGGAGATGAGGGCGCATTGCTTCAGCGTGTCGTAAA 1374 Query 2073713 TGCCCTCGATCGAGTCGGCCTTCATGTCCAACAGAAAGCA 2073752 |||| ||||| |||| | |||||| | | ||| ||||| Sbjct 1373 TGCCTTCGATGCTGTCGTCTTTCATGGCGAGCAGGAAGCA 1334 Score = 100 bits (110), Expect = 4e-15 Identities = 284/440 (65%), Gaps = 2/440 (0%) Strand=Plus/Minus Query 2071574 ACTGGACGACCTCGGTGCACAGGTTGGCCGACATCGTGGTGCCCAGGTTCTGCTGGTTGC 2071633 ||| || || || ||||| |||||| ||| | |||||||||| ||||| ||||||| Sbjct 1985 ACTCGATGATTTCTGTGCAGAGGTTGCTGGACTTGATGGTGCCCAGATTCTGTTGGTTGC 1926 Query 2071634 TGGTCAGGTTGACGGCGTCCTTGTGCAGCATGTAGGGCGCACCCGTCTCGATCTGCGCCG 2071693 | || |||| |||||| |||| ||||||||| |||| ||| || || |||| | | Sbjct 1925 TCTTCCTGTTGCAGGCGTCTTTGTACAGCATGTATGGCGTACCAGTTTCTGTCTGGGACT 1866 Query 2071694 TGACGATGGCCGACCAAATTTGGCGCGCGGGCACCGAGGTCCTCGCGCGGCCC-TNNNNN 2071752 || | ||| ||| | || | || |||| | | || | | ||| | Sbjct 1865 CGATAACGGCGTGCCACAACTGCTGAGCCTTCACC-ACGCGCTTGAACTTCCCCTGCTTC 1807 Query 2071753 NNNNNNNNNNNNNAGAGGGCGTCAAAGGCGGCGCCGTGGCACTCGTGCAGGCCGGGCGCC 2071812 |||| || || | | || |||||||| || || || | Sbjct 1806 TCATAGGAGGTGTAGAGCTTTTCGAACTCCTCCCCCCAGCACTCGTCCAACCCTGGGCAC 1747 Query 2071813 TCGGACGGGCAAAAGAGCGACCAGTCGCCGCCAGTCACCACGCGGCGCATAAACAGGTCG 2071872 ||| || || | || |||||||| || || |||| | ||| ||||||||| Sbjct 1746 TCGTTGGGACACATCAGAGACCAGTCCTCGTTGCTCTCCACTCTCTTCATGAACAGGTCG 1687 Query 2071873 CACGTCCACAGGCCGTAAAAGAGATCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTTCTTT 2071932 ||||||||||||| || || || | || | | ||||||||| ||| |||||| Sbjct 1686 GGGATCCACAGGCCGTAGAAAAGGTCCCTGGCTCTCTGCTCCTCCTTTCCGGTGTTCTTC 1627 Query 2071933 TTCAGGTCGAGCCAGTCGACGAGGTCGGCGTGCCACGGCTCCAGGTAGCAGGCAAAGGCG 2071992 || || || || |||| | | |||||||||||| ||||||||||| ||| ||||| Sbjct 1626 TTTAGCTCCAGGAAGTCAAACACGTCGGCGTGCCAGGGCTCCAGGTACATGGCGAAGGCT 1567 Query 2071993 CCCTTGCGCTTGCCGCCGCC 2072012 || | |||| |||||| Sbjct 1566 CCTGGTCTCTTGTTGCCGCC 1547 Score = 96.9 bits (106), Expect = 5e-14 Identities = 131/183 (72%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 2069564 TCCACAGGCCGCGCGCCATCATGCGCTCGACCAGGTGGCGGTTGACCACGGTAAAGTCGC 2069623 ||||||| || | | || ||| | | || ||| || ||||||| | ||| || | Sbjct 2636 TCCACAGCCCTCTCTCCGTCAGGTCTTTGAGCAGATGAGGGTTGACGATCTGAAACTCTC 2577 Query 2069624 CCGAGAGCACGCGGCGCGTGTAGATGTTGCTCGTGATGACCTCGCACGCCTCGGTGTTGC 2069683 | ||||| || | ||| |||||||||||||| ||| | | ||| | |||| |||||| Sbjct 2576 CGGAGAGGACCCTGCGGGTGTAGATGTTGCTGGTGTAGGCTTCGATGGACTCGTTGTTGC 2517 Query 2069684 CCAGGATCTGCGACGTCGTGGCCGTGGGCATGAGCGCCACGAGCAGCGAGTTGCGCAGGC 2069743 |||||||||| | || | |||||||||||| | |||| ||||| ||| | || || Sbjct 2516 CCAGGATCTGGGCGGTGGAGGCCGTGGGCATCGGGGCCAGCAGCAGGCTGTTCCTCACGC 2457 Query 2069744 CGT 2069746 ||| Sbjct 2456 CGT 2454 >seq270369 Length=13262 Score = 93.3 bits (102), Expect = 7e-13 Identities = 99/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 2071579 ACGACCTCGGTGCACAGGTTGGCCGACATCGTGGTGCCCAGGTTCTGCTGGTTGCTGGTC 2071638 |||| ||| |||||||| ||| || | |||||||||| |||||||||||||| || Sbjct 6577 ACGATCTCCGTGCACAGATTGCTGGATTTGATGGTGCCCAGATTCTGCTGGTTGCTCTTC 6636 Query 2071639 AGGTTGACGGCGTCCTTGTGCAGCATGTAGGGCGCACCCGTCTCGATCTGCGCCGTGACG 2071698 |||| ||||||||||| |||||||| |||| || || ||| |||||| || | Sbjct 6637 CTGTTGCAGGCGTCCTTGTAGAGCATGTATGGCGTGCCGGTTTCGGTCTGCGATTCGATG 6696 Query 2071699 ATGGCCGACCA 2071709 ||||| |||| Sbjct 6697 ATGGCGTACCA 6707 Score = 89.7 bits (98), Expect = 8e-12 Identities = 88/114 (77%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 2069616 AAAGTCGCCCGAGAGCACGCGGCGCGTGTAGATGTTGCTCGTGATGACCTCGCACGCCTC 2069675 ||| || ||||||||||| | ||| |||||||||||||| ||| |||| | ||| Sbjct 5608 AAACTCTCCCGAGAGCACCCTGCGGGTGTAGATGTTGCTGGTGTAAGCCTCAATGGACTC 5667 Query 2069676 GGTGTTGCCCAGGATCTGCGACGTCGTGGCCGTGGGCATGAGCGCCACGAGCAG 2069729 | |||||||||||||||| | || | || ||||||||| | |||| |||||| Sbjct 5668 GTTGTTGCCCAGGATCTGTGCGGTGGAAGCTGTGGGCATGGGGGCCAAGAGCAG 5721 >seq145694 Length=584 Score = 93.3 bits (102), Expect = 7e-13 Identities = 87/111 (78%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 434126 CGTGATCTCCTTTGACGGCACCTACGTCAACGACCGCCACTTTGCGCTGGCCACCGACAC 434185 ||| |||||||||||||| ||||||||||| |||| ||||| || ||| |||||| Sbjct 154 CGTCATCTCCTTTGACGGTTCCTACGTCAACTACCGTCACTTGGCTCTGCTGTGCGACAC 213 Query 434186 CATGTGCTGTCGCGGCTCGGTGGTGGCCGTCACGCGGCACGGCTTCAACCG 434236 |||| ||| ||||| || ||||| ||||||| |||||| ||||||| Sbjct 214 CATGACCTGCCGCGGTCACCTGATGGCCATCACGCGTCACGGCATCAACCG 264 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7886543218582848