Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20steindachneri_20[genbank_20GCA_5F001910785.1_202016-12- 20] 279,232 sequences; 648,011,071 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq95031 266 3e-66 seq270369 120 3e-22 seq234594 95.1 1e-14 >seq95031 Length=3790 Score = 266 bits (294), Expect = 3e-66 Identities = 992/1534 (65%), Gaps = 52/1534 (3%) Strand=Plus/Minus Query 148237 TCAGGTCATCGATCAGATACTGATTCACCACCTGAAACTCGCCGGCGAGCACGCGCCGCA 148296 ||||||| | || ||||| | || || | ||||||||| |||| ||| || | || Sbjct 2618 TCAGGTCTTTGAGCAGATGAGGGTTGACGATCTGAAACTCTCCGGAGAGGACCCTGCGGG 2559 Query 148297 GATACACGTTGCTCGTAAACGGTTCAAACGACTCGTTGTTGCCCAAAATCTGCGCGGTCG 148356 || | |||||| || | | ||| | |||||||||||||||| ||||| ||||| | Sbjct 2558 TGTAGATGTTGCTGGTGTAGGCTTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGG 2499 Query 148357 TTGCCGTGGGCATGTACGCTACCAGCAGCGAGTTGCGCAAACCGCGATTTTTTATTTTGC 148416 ||||||||||| || | |||||| ||| | || ||| | | || || Sbjct 2498 AGGCCGTGGGCATCGGGGCCAGCAGCAGGCTGTTCCTCACGCCGTGGATGGCGATCTTCT 2439 Query 148417 GCTTCAGAGCCGCCCAGTCC--CAGAGCGGCGACGGTGTCACGTTCCACATGTCGTACTG 148474 |||||| | ||||||| ||| ||| | || || | ||||||||||||||| Sbjct 2438 CCTTCAGCAGCTTCCAGTCCAGCAGTTCGGTG--GGCTTCTTCTCCCACATGTCGTACTG 2381 Query 148475 CAGAATGCCGCGGCTAGCGGGGCTGCCCTCGTACGAGCTGTACGGTCCGTGCGCCGCCGC 148534 ||| ||||| ||| |||| ||| |||||| ||| || ||| || | || || Sbjct 2380 CAGGATGCCCTTGCTGACGGGAGAGCCTGCGTACGTCTCGTAGGGGCCGAGCTCGGCGGC 2321 Query 148535 CAGTTCGCAGCTCGCCTCGAGCGCGCCGTAGTAAATCGTCTCGGCAATTTGCCTGTTGAG 148594 ||| |||||||||||||| || ||| ||| ||| || | |||| ||||| | || || Sbjct 2320 CAGCTCGCAGCTCGCCTCCAGGGCGGCGTGGTAGATGGCCTCGAAGATTTGAATATTCAG 2261 Query 148595 CAGCGCCGCCGACTCGCTTTCGTACGGCATACGCAGCCGCACAAACGCGTCGGCAAGGCC 148654 |||| ||| | ||||||| |||| ||||| | | || || || || | || Sbjct 2260 CAGCTGAGCCTCTTTGCTTTCGAACGGGTAACGCATGAGGATGAAGGCATCCGCCAAACC 2201 Query 148655 CTGTACGCCCACGCCAATGGGCCGGTGTTTAATGTTGGAGAGGCGCGCGCTCTCGAGC-- 148712 || ||||| | ||||| |||| ||| ||||||| ||| ||| || Sbjct 2200 TTGGACGCCAATTCCAATCGGCCTGTGGCGCTTGTTGGACTTTTCCGC---TTCGGGCAC 2144 Query 148713 -GGATAGTGGTTGCGGTCGATGATCTTGTCAAGATTGCGCACCACCACCTTTGT-AATTC 148770 ||||||| ||| ||||||||||||| | ||| || | || || || | Sbjct 2143 TGGATAGTAGTTAATTTCGATGATCTTGTTCAAATTCTTGACGATTACTTTGGTCACAGA 2084 Query 148771 TGCGCAGCAATTCAAAATCGTACTTGTCATCTAC-----GATGCATCGGTTCACGGCGAT 148825 ||| ||| || ||| || | ||| || | || | | ||| | || || Sbjct 2083 TGC-CAGTTTTTTAAAGTC--AAAAGTCCGCTCCGGGGTGACGTACATGTTGAGCGCAAT 2027 Query 148826 AGAGGCTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTCTACGATCTCGGCGCA 148885 ||||| ||||| ||||| || |||||| || | ||||||| | ||| || | ||| Sbjct 2026 TGAGGCCAGATTACACACCGCTACCTCATCGTGGCTGGTGTACTCGATGATTTCTGTGCA 1967 Query 148886 CAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTGCTCTTGCTGTTGCACGCGTC 148945 || |||||| | ||||| ||||| |||| ||| |||||||| |||||||| ||||| Sbjct 1966 GAGGTTGCTGGACTTGATGGTGCCCAGATTCTGTTGGTTGCTCTTCCTGTTGCAGGCGTC 1907 Query 148946 CTTGTACAGCATGTACGGTCCGCCAGTTTCCACCTGCGTTTCCACTATGAACCGATGCAG 149005 |||||||||||||| || |||||||| ||| | || | | | | || Sbjct 1906 TTTGTACAGCATGTATGGCGTACCAGTTTCTGTCTGGGACTCGATAACGGCGTGCCACAA 1847 Query 149006 GTCCTGCGCGCGCACTTGCTGCTCGTAGCGACCCTCCTGCTCGTATAAAGTATACAGCCG 149065 | ||| || ||| ||| | | |||| || ||| || | || || ||| Sbjct 1846 CTGCTGAGCCTTCACCACGCGCTTGAACTTCCCCTGCTTCTCATAGGAGGTGTAGAGCTT 1787 Query 149066 CTCGAACGCCTCGCCGTAGCAATCGTCGAGACCGGGGCACTTGTGCGGGCACATGAGCGA 149125 |||||| |||| || |||| ||||| | || ||||||| || || ||||| || || Sbjct 1786 TTCGAACTCCTCCCCCCAGCACTCGTCCAACCCTGGGCACTCGTTGGGACACATCAGAGA 1727 Query 149126 CCACACGCCGTCCGCGTACACGCGCTTCATAAACAGATCGGGCACCCAGAGCGCGTACAT 149185 ||| | ||| | ||| | |||||| ||||| ||||| | ||| || |||| | Sbjct 1726 CCAGTCCTCGTTGCTCTCCACTCTCTTCATGAACAGGTCGGGGATCCACAGGCCGTAGAA 1667 Query 149186 GAGGTCGC--GCGCCTTGCAGTCTTCGGCGCCCATGTTGCGGCGCAGGTTGAGCACGCTG 149243 ||||| | || | ||| || || || |||| || | || | | Sbjct 1666 AAGGTCCCTGGCTCTCTGC--TCCTCCTTTCCGGTGTTCTTCTTTAGCTCCAGGAAGTCA 1609 Query 149244 AATATGTCCGCGTGCCACGGCTCAATGTACACCGCGAGCGCGCC------CTTGCGCTTG 149297 || | ||| |||||||| ||||| | ||||| |||| || || |||| ||| Sbjct 1608 AACACGTCGGCGTGCCAGGGCTCCAGGTACATGGCGAAGGCTCCTGGTCTCTTG---TTG 1552 Query 149298 CCGCCCTGGTCGACGTGGCGCACCATGTTGTTAAACACTCGAACCATAGGTTCAATGCCA 149357 |||||||||||||||| || || ||||||| | |||| | ||| || | | || Sbjct 1551 CCGCCCTGGTCGACGTAACGTGCCGTGTTGTTGTAAACTCTCAGCATGGGGACGACCCCG 1492 Query 149358 CTGGCAGTGCCGTTAGTAGAGCTAATGCGACTGCCGCGCGCTCGCACTT-TG-TGCACGT 149415 ||| ||||||| || || |||| || || | | || || || |||| | Sbjct 1491 TTGGAGTTGCCGTTGGT---GC--CGGCGA-TGTAGCTC-CCCGTTGTTCTGATGCAGCT 1439 Query 149416 T-----GACGCCGATGCCGCCGCCGTACTTTGAGATGGCCGCGCAGTCGCCGAGCGTCGA 149470 | || || || || ||| | | || |||||| ||||| | ||||| Sbjct 1438 TATCGCCACACCAATTCCCCCGGCTGATTTGGAGATGAGGGCGCATTGCTTCAGCGTGTC 1379 Query 149471 GTAGATGCCCTCGATGCTGTCGCGCTTCATGGTCAGCAGAAAGCACGAGCACATTTGCGG 149530 ||| ||||| |||||||||||| ||||||| ||||| ||||| | ||| || || Sbjct 1378 GTAAATGCCTTCGATGCTGTCGTCTTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGTGG 1319 Query 149531 AAAACGCGTGCCGGCCGCGAACATGGTGGGGCTGGCGTGTGTAAAATATTTCTGGCTCAT 149590 || || || ||| | |||||| |||||| || || | |||| || Sbjct 1318 CCTGTTGGTTCCTGCGTTGAAGAGCGTGGGGGAGGCGTGGGTGAACCACTTCTCTGACAG 1259 Query 149591 CATCTCGTACGACTCGAGCACGCGGTCCATGT-CATCGCCATGGATGCCTATGGCGACGC 149649 || | ||||| ||| | | ||| |||| |||| ||||| || | || || | Sbjct 1258 CAGGTTGTACGTCTCAATGGCTGCGTCGATGTCCATC-TTGTGGATCCCGACGGACACTC 1200 Query 149650 GCATCAGCATATGCTGCGGTCGCTCCGCCACTTTGTTTCCAATTTTGAGCAAGTAG--CC 149707 ||| ||||| |||||||||||||| ||||||||| || || | || |||| || Sbjct 1199 TCATGAGCATGTGCTGCGGTCGCTCGGCCACTTTGCCGTTGATCTTCAACAGGTAGGACC 1140 Query 149708 GTTTTCTAGTGTCTTGTAGCCAAAGTACTTGTAG 149741 | || || |||||| |||| ||| | |||||| Sbjct 1139 G--CTCCAGAGTCTTGAAGCCGAAGAAGTTGTAG 1108 >seq270369 Length=13262 Score = 120 bits (132), Expect = 3e-22 Identities = 101/124 (81%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 148864 TGTACTCTACGATCTCGGCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGAT 148923 |||||||||||||||| | ||||||||||||| ||||||| ||||| |||| || | Sbjct 6569 TGTACTCTACGATCTCCGTGCACAGATTGCTGGATTTGATGGTGCCCAGATTCTGCTGGT 6628 Query 148924 TGCTCTTGCTGTTGCACGCGTCCTTGTACAGCATGTACGGTCCGCCAGTTTCCACCTGCG 148983 ||||||| |||||||| ||||||||||| |||||||| || ||| ||||| ||||| Sbjct 6629 TGCTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTATGGCGTGCCGGTTTCGGTCTGCG 6688 Query 148984 TTTC 148987 ||| Sbjct 6689 ATTC 6692 >seq234594 Length=1052 Score = 95.1 bits (104), Expect = 1e-14 Identities = 100/132 (76%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 133530 ATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCTGC 133589 || |||| ||||||||| || || |||||||||||||| |||||| || | | | Sbjct 188 ATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCTTTCACGTTC 129 Query 133590 TCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTACG 133649 |||| |||||| |||| || || || | ||||| ||| ||||| || || || || ||| Sbjct 128 TCAATGGTGTCGCTGGGTTCAACCTCCAGGGTGATGGTCTTGCCAGTGAGGGTCTTAACG 69 Query 133650 AAAATCTGCATG 133661 || ||||||||| Sbjct 68 AAGATCTGCATG 57 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 481733468039680