Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20steindachneri_20[genbank_20GCA_5F001910785.1_202016-12- 20] 279,232 sequences; 648,011,071 total letters Query= NC_026141.2 Length=4988 Score E Sequences producing significant alignments: (Bits) Value seq5506 96.9 1e-16 seq268885 80.6 8e-12 >seq5506 Length=7136 Score = 96.9 bits (106), Expect = 1e-16 Identities = 62/68 (91%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 |||||| |||||||||||||||||| |||||||||||||||||||||| ||||||||| | Sbjct 822 GCTGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCACTGGTTCAATC 763 Query 2829 CCGGGCTT 2836 | ||| || Sbjct 762 CTGGGTTT 755 Score = 95.1 bits (104), Expect = 4e-16 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 |||||| ||| |||||||||||||| ||||||||||||||||||||||||||||| | | Sbjct 429 GCTGAAATAGTTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTTTATC 370 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 369 CCGGGTTTCGGC 358 Score = 95.1 bits (104), Expect = 4e-16 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 |||||| |||||||||||||||||| ||||||||||||||||||||||||| ||| | | Sbjct 969 GCTGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTTGTTTGATC 910 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 909 CCGGGTTTCGGC 898 Score = 78.8 bits (86), Expect = 3e-11 Identities = 48/51 (94%), Gaps = 0/51 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCT 2819 || ||| |||||||||||||||||| ||||||||||||||||||||||||| Sbjct 51 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCT 1 >seq268885 Length=1513 Score = 80.6 bits (88), Expect = 8e-12 Identities = 49/52 (94%), Gaps = 0/52 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTG 2820 || ||| |||||||||||||||||| |||||||||||||||||||||||||| Sbjct 283 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTG 334 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15801193736640