Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20steindachneri_20[genbank_20GCA_5F001910785.1_202016-12- 20] 279,232 sequences; 648,011,071 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq95031 132 7e-25 seq198788 107 3e-17 seq270369 104 3e-16 seq146619 96.9 5e-14 seq145694 87.8 3e-11 >seq95031 Length=3790 Score = 132 bits (146), Expect = 7e-25 Identities = 206/294 (70%), Gaps = 8/294 (3%) Strand=Plus/Plus Query 259896 TGTCGCAGCAGTTGTTCACCTCAGCGACGCCCACGCTCTTTAATGCCGGCACGCCGCGCC 259955 |||| || ||| ||||||| || | ||||||||||| || || || || | | Sbjct 1260 TGTCAGAGAAGTGGTTCACCCACGCCTCCCCCACGCTCTTCAACGCAGGAACCAACAGGC 1319 Query 259956 CGCAGAATTCGTCGTGCTTTCTGTTGGACATGAAGGCCGATTCGATCGAGGGCATCTATG 260015 | ||| || ||||| ||| | | |||||| | ||| ||||| ||||| || | Sbjct 1320 CACAGCTGTCCAGCTGCTTCCTGCTCGCCATGAAAGACGACAGCATCGAAGGCATTTACG 1379 Query 260016 ACACGCTCAAGCAGTGCGCGCTCATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGCAC 260075 ||||||| ||||| ||||| ||||||||||| | ||||| || || ||| | || Sbjct 1380 ACACGCTGAAGCAATGCGCCCTCATCTCCAAATCAGCCGGGGGAATTGGTGTGGCG---- 1435 Query 260076 ACAAGGTGC----GCGCCGCGGGCGCCTACGTGGCGGGCACCAACGGCCAGTCCAACGGC 260131 | ||| ||| | | |||| |||| | || |||||||||||| | |||||||| Sbjct 1436 ATAAGCTGCATCAGAACAACGGGGAGCTACATCGCCGGCACCAACGGCAACTCCAACGGG 1495 Query 260132 CTTGTGCCCATGCTTCGCGTTTTTAACGACACGGCGCGCTACGTCGACCAGTGC 260185 | || |||||||| | |||| ||| ||||||| || |||||||||||| || Sbjct 1496 GTCGTCCCCATGCTGAGAGTTTACAACAACACGGCACGTTACGTCGACCAGGGC 1549 Score = 95.1 bits (104), Expect = 2e-13 Identities = 120/165 (73%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 262934 TGCTCGTGGCGCTCATGCCCACGGCCACGACGTCGCAGATCCTGGGCAACACCGAGGCGT 262993 |||| |||| | |||||||||||| | || | |||||||||||||||| |||| | Sbjct 2472 TGCTGCTGGCCCCGATGCCCACGGCCTCCACCGCCCAGATCCTGGGCAACAACGAGTCCA 2531 Query 262994 TCGAGGTCATCACGAGCAACATCTACACGCGCCGCGTGCTCTCGGGCGACTTTACCGTGG 263053 |||| | | ||| |||||||||||||| ||| | || ||||| || || ||| | | Sbjct 2532 TCGAAGCCTACACCAGCAACATCTACACCCGCAGGGTCCTCTCCGGAGAGTTTCAGATCG 2591 Query 263054 TCAACCGCCACCTGGTCAAGCGCATGGTGGCGCGCGGCCTGTGGA 263098 |||||| || ||| |||| | || || | | || ||||||| Sbjct 2592 TCAACCCTCATCTGCTCAAAGACCTGACGGAGAGAGGGCTGTGGA 2636 >seq198788 Length=1495 Score = 107 bits (118), Expect = 3e-17 Identities = 128/174 (74%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 724969 CCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCG 725028 ||||| ||||||||||| || || |||||| || | || || |||| ||||||||| Sbjct 620 CCATGAGCATCATGAACTCCTTCGTGAACGACCTGTTTGAGCGGATCGCCACCGAGGCGT 679 Query 725029 GTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCG 725088 || ||||| | | ||| || ||| ||| ||| || | ||| | |||||||||| Sbjct 680 CCCGGCTGGCTCAGTACAATAAACGCTCCACCATCACCAGCAGAGAGGTGCAGACCGCCG 739 Query 725089 TGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || | ||| | ||| ||| || ||||||| |||||||| |||||||| |||| Sbjct 740 TGAGGCTGCTGCTGCCCGGGGAGCTGGCCAAACACGCCGTGTCCGAGGGAACCA 793 >seq270369 Length=13262 Score = 104 bits (114), Expect = 3e-16 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 262091 CAGATCTGGTCGGCCATTGTCGCGGCCCATATCGAGACCGGCACGCCCTACATGGTCTAC 262150 ||| | |||| ||||| ||| | || | ||| ||||||||||| |||||| ||||| Sbjct 6713 CAGGTGTGGTACGCCATCATCGAATCGCAGACCGAAACCGGCACGCCATACATGCTCTAC 6654 Query 262151 AAGGACGCCGTCAACCTGACCAGCAACCAGCAGAACCTGGGCACCACGACAGAGGCCAAC 262210 ||||||||| |||| || |||||||||||||| |||||||||| | | ||| Sbjct 6653 AAGGACGCCTGCAACAGGAAGAGCAACCAGCAGAATCTGGGCACCATCAAATCCAGCAAT 6594 Query 262211 CTGTGCACCGAGATCGT 262227 |||||||| |||||||| Sbjct 6593 CTGTGCACGGAGATCGT 6577 Score = 91.5 bits (100), Expect = 2e-12 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 262934 TGCTCGTGGCGCTCATGCCCACGGCCACGACGTCGCAGATCCTGGGCAACACCGAGGCGT 262993 ||||| |||| | ||||||||| || | || | |||||||||||||||| |||| | Sbjct 5720 TGCTCTTGGCCCCCATGCCCACAGCTTCCACCGCACAGATCCTGGGCAACAACGAGTCCA 5661 Query 262994 TCGAGGTCATCACGAGCAACATCTACACGCGCCGCGTGCTCTCGGGCGACTTT 263046 | |||| ||| |||||||||||||| ||| | ||||||||||| || ||| Sbjct 5660 TTGAGGCTTACACCAGCAACATCTACACCCGCAGGGTGCTCTCGGGAGAGTTT 5608 >seq146619 Length=3725 Score = 96.9 bits (106), Expect = 5e-14 Identities = 165/243 (68%), Gaps = 20/243 (8%) Strand=Plus/Minus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||| ||| | ||||||||||||||| |||| |||| ||| |||| ||||| Sbjct 1451 TACAAAGTGATGAAGCAGGTGCACCCCGACACCGG-----CATC-TCCTCCAAGGCCATG 1398 Query 724974 TCGATCATGAACTCGTTTGTCAACGAC--------------ATGATCGACCGCATCGGCA 725019 ||||||||||| || || | || | || ||||||| | Sbjct 1397 GGCATCATGAACTCCTTCGTGANNNNNNNNNNNNNNNNNNNATCTTTGAGCGCATCGCCG 1338 Query 725020 CCGAGGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCC 725079 |||||| || ||||| | || ||||||||| ||| ||| | | | ||||||| Sbjct 1337 GTGAGGCCTCCCGTCTGGCTCACTACAACAAGCGTTCCACCATCACCTCCAGGGAGATCC 1278 Query 725080 AGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCA 725139 |||| ||||| |||||| | ||| ||| || ||||||| ||||||||| || ||||| | Sbjct 1277 AGACGGCCGTCCGCCTGCTGCTGCCCGGTGAGCTGGCCAAGCACGCCGTGTCTGAGGGTA 1218 Query 725140 CCA 725142 ||| Sbjct 1217 CCA 1215 >seq145694 Length=584 Score = 87.8 bits (96), Expect = 3e-11 Identities = 88/112 (79%), Gaps = 2/112 (2%) Strand=Plus/Minus Query 1813106 CGGTTAAAGCCGTGCCGCGTGACGGCCACCAC-TGAGCCGCGGCAACACATGGTGTCGGT 1813164 ||||| | |||||| ||||||| ||||| || ||| |||||||| |||||||||| Sbjct 264 CGGTTGATGCCGTGACGCGTGATGGCCATCAGGTGA-CCGCGGCAGGTCATGGTGTCGCA 206 Query 1813165 GGCCAGCGCAAAGTGGCGGTCGTTGACATAGGTGCCGTCAAAGGAGATCACG 1813216 ||| || ||||| |||| |||||| |||| |||||||||||||| ||| Sbjct 205 CAGCAGAGCCAAGTGACGGTAGTTGACGTAGGAACCGTCAAAGGAGATGACG 154 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7150878760371584