Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sebastes_20steindachneri_20[genbank_20GCA_5F001910785.1_202016-12- 20] 279,232 sequences; 648,011,071 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq95031 168 7e-37 seq270369 98.7 1e-15 >seq95031 Length=3790 Score = 168 bits (186), Expect = 7e-37 Identities = 899/1426 (63%), Gaps = 24/1426 (2%) Strand=Plus/Plus Query 7524 CTACTTGTTGAAAATCAACGGCGAATGCGCGGAACGAATTCAACACATGCTGTTGCGCGT 7583 |||| ||||||| ||||||||| || || || ||| || |||||||| || | || Sbjct 1144 CTACCTGTTGAAGATCAACGGCAAAGTGGCCGAGCGACCGCAGCACATGCTCATGAGAGT 1203 Query 7584 GGCGGTGGGCATTCACGGCGAAGACATTGACGCCGCCTTGGAAACGTACCAAATGATGTC 7643 | | || || || ||| ||||| ||||| ||| | || |||||| | || |||| Sbjct 1204 GTCCGTCGGGATCCACAAGATGGACATCGACGCAGCCATTGAGACGTACAACCTGCTGTC 1263 Query 7644 TTTGAAACAGTTTACGCACGCTTCGCCCACCATGTTTGCCGCGGGCACAAACGCGCCTCA 7703 ||| ||| || ||||| || ||||| | || ||| || || ||| ||| || Sbjct 1264 AGAGAAGTGGTTCACCCACGCCTCCCCCACGCTCTTCAACGCAGGAACCAACAGGCCACA 1323 Query 7704 ATTGTCCTCGTGTTTTTTGCTAACCATGCGCGAAGACAGCATCGACGGCATTTACAACAC 7763 ||||| || || |||| ||||| || ||||||||||| ||||||||| |||| Sbjct 1324 GCTGTCCAGCTGCTTCCTGCTCGCCATGAAAGACGACAGCATCGAAGGCATTTACGACAC 1383 Query 7764 GCTGCGCGATTGCGCCAATATTTCCAAATACGGCGGCGGAATAGGTCTGAACGTAAACGA 7823 |||| | |||||| || ||||||| | ||| ||||| ||| || ||| | Sbjct 1384 GCTGAAGCAATGCGCCCTCATCTCCAAATCAGCCGGGGGAATTGGTGTGGCGATAAGCTG 1443 Query 7824 CGTGCGCGCCAACGGTAGCCGCATCGTGTCCACCAACGGAAAAGCCAGCGGTTTAGAGCC 7883 | | | | | || ||| ||||| ||||||||| || ||| ||| | | || Sbjct 1444 CATCAGAACAACGGGGAGCTACATCGCCGGCACCAACGGCAACTCCAACGGGGTCGTCCC 1503 Query 7884 CATGTTGCGCGTGTTCAATAACGCGGTGCGACATGTAGACCAGGGGGG---AAAGCGCAA 7940 |||| || | || | ||| ||| ||| || | || |||||||| || ||| | Sbjct 1504 CATGCTGAGAGTTTACAACAACACGGCACGTTACGTCGACCAGGGCGGCAACAAGAGACC 1563 Query 7941 AGGCGCCGCTGCCATCTATTTGGAGCCGTGGCACGCGGACATTTACGCAGTGCTAAATCT 8000 ||| ||| ||||| || ||||||| |||||||| ||| | | | | || | || Sbjct 1564 AGGAGCCTTCGCCATGTACCTGGAGCCCTGGCACGCCGACGTGTTTGACTTCCTGGAGCT 1623 Query 8001 GCGTCGCAACATGGGTTGCGAAGA-CAGCAAAGCGCGCGATCTATTCTTCGGATTGTGGG 8059 |||| || || || ||| | ||| | || || |||| ||| ||||| Sbjct 1624 AAAGAAGAACACCGGAAAGGAGGAGCAG-AGAGCCAGGGACCTTTTCTACGGCCTGTGGA 1682 Query 8060 TGCCCGATCTGTTTATGAGGCGCGTTCATTTCGACGCACAATGGTCGCTCATGTGCCCCG 8119 | ||||| ||||| |||| | | || | | ||| | ||||| || ||||| ||| Sbjct 1683 TCCCCGACCTGTTCATGAAGAGAGTGGAGAGCAACGAGGACTGGTCTCTGATGTGTCCCA 1742 Query 8120 ATCGTTGCCCTTTATTAAAAAACGTTTACGGTTCAAAATTTGAACAATTGTACAAACAAT 8179 | ||||| || | | | || | || ||| | | |||| | Sbjct 1743 ACGAGTGCCCAGGGTTGGACGAGTGCTGGGGGGAGGAGTTCGAAAAGCTCTACACCTCCT 1802 Query 8180 ACGAACACGACGGCGCGTACGTGCGGCAAGTGAAAGCGCGCGACCTGCACCGCGCCATTA 8239 | || | | || || | ||| ||||| || | | || | |||| ||| Sbjct 1803 ATGAGAAGCAGGGGAAGTTCAAGCGCGTGGTGAAGGCTCAGCAGTTGTGGCACGCCGTTA 1862 Query 8240 TCGAATGTCAAAACGAAACCGGTATGCCGTACATGCTGTACAAAGACGCTTGCAACGCCA 8299 |||| | || | ||||| |||| ||| |||||||||||||||||||| |||||| | Sbjct 1863 TCGAGTCCCAGACAGAAACTGGTACGCCATACATGCTGTACAAAGACGCCTGCAACAGGA 1922 Query 8300 AAAGCAATCAAAGCAACGTGGGCACCATTTGTTGCAGCAATCTGTGCGCTGAAATTGTAC 8359 | ||||| ||| || |||||||||| | |||||| || ||| | ||||| | Sbjct 1923 AGAGCAACCAACAGAATCTGGGCACCATCAAGTCCAGCAACCTCTGCACAGAAATCATCG 1982 Query 8360 AGTACAGCGCGCCCGACGAAGTGGCCGTTTGCAATCTAGCGTCGGTGTGTTTAAACGCGT 8419 |||||| | | ||| || || || || || ||||| || || | | ||| || Sbjct 1983 AGTACACCAGCCACGATGAGGTAGCGGTGTGTAATCTGGCCTCAATTGCGCTCAACATGT 2042 Query 8420 TCGTTGATCGACGCTCAAAC--ACTTACGACTTTGAACAATTGAAAAACGCCGTG---CA 8474 ||| || | | | |||| |||||| || || || | | ||| | Sbjct 2043 ACGT-----CACCCCGGAGCGGACTTTTGACTTTAAAAAACTGGCA---TCTGTGACCAA 2094 Query 8475 AGTGACGGTACGCAATTTAGATCGCATCATTGATGTCAATTTTTATCCCTTGGAAGAAGC 8534 ||| | || ||||| | ||||| || | || | ||||| || ||||| Sbjct 2095 AGTAATCGTCAAGAATTTGAACAAGATCATCGAAATTAACTACTATCCAGTGCCCGAAGC 2154 Query 8535 GCGCGTATCGAACATGCGCCACAGACCCGTTGGCGTGGGCGTGCAAGGTCTGGCCGACGC 8594 | || |||| ||||||||| || |||| | ||||| |||||| |||| || || Sbjct 2155 GGAAAAGTCCAACAAGCGCCACAGGCCGATTGGAATTGGCGTCCAAGGTTTGGCGGATGC 2214 Query 8595 GTTTGCCATGTTGCGCCTCCCCTACGAAAGCCAAGAAGCGCGCATGCTCAACATAAAAAT 8654 || | | |||| ||| | ||||||| |||| || | |||| || || |||| Sbjct 2215 CTTCATCCTCATGCGTTACCCGTTCGAAAGCAAAGAGGCTCAGCTGCTGAATATTCAAAT 2274 Query 8655 AGCGGAAACGGTGTATTACGGCGCATTAGAAGCCAGCTGTCAACTTGCCCGAGAATTGGG 8714 || | | || ||| ||| | || || ||||| | || ||| || | || Sbjct 2275 CTTCGAGGCCATCTACCACGCCGCCCTGGAGGCGAGCTGCGAGCTGGCCGCCGAGCTCGG 2334 Query 8715 CACGTACGAATCGTACGCGGGCAGCCCTGCCAGCCGCGGAATATTGCAATACGACATGTG 8774 | | ||||| ||||||| ||| || | |||| || || |||| ||||||||||| Sbjct 2335 CCCCTACGAGACGTACGCAGGCTCTCCCGTCAGCAAGGGCATCCTGCAGTACGACATGTG 2394 Query 8775 GAATGTCACGCCCACCTCTTTG-TGGAATTGGAGCGATTTGAAACGCAAAATTGC--TCA 8831 | | | ||||||| || |||| | | ||| |||| || || || || Sbjct 2395 GGAGAAGAAGCCCACCGAACTGCTGGACTGGAAGC-TGCTGAAGGAGAAGATCGCCATCC 2453 Query 8832 ATTCGGTTTGCGCAATTCGCTGTTGGTGGCTTACATGCCCACCGCCACGACTGCTCAAAT 8891 | ||| || | || ||| || |||| |||||||| ||| | || || || || Sbjct 2454 A--CGGCGTGAGGAACAGCCTGCTGCTGGCCCCGATGCCCACGGCCTCCACCGCCCAGAT 2511 Query 8892 AATGGGAAACAACGAATCCTTTGAGCCGTTCACCAACAACGTGTAC 8937 |||| |||||||| ||| | || | | ||||| |||| | ||| Sbjct 2512 CCTGGGCAACAACGAGTCCATCGAAGCCTACACCAGCAACATCTAC 2557 >seq270369 Length=13262 Score = 98.7 bits (108), Expect = 1e-15 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 8232 CGCCATTATCGAATGTCAAAACGAAACCGGTATGCCGTACATGCTGTACAAAGACGCTTG 8291 |||||| ||||||| || | ||||||||| | ||| |||||||| ||||| ||||| || Sbjct 6702 CGCCATCATCGAATCGCAGACCGAAACCGGCACGCCATACATGCTCTACAAGGACGCCTG 6643 Query 8292 CAACGCCAAAAGCAATCAAAGCAACGTGGGCACCATTTGTTGCAGCAATCTGTGCGCTGA 8351 |||| || ||||| || || |||||||||| | ||||||||||||| | || Sbjct 6642 CAACAGGAAGAGCAACCAGCAGAATCTGGGCACCATCAAATCCAGCAATCTGTGCACGGA 6583 Query 8352 AATTGTACAGTACA 8365 || ||| |||||| Sbjct 6582 GATCGTAGAGTACA 6569 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 503634357424640